View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3820_high_63 (Length: 364)
Name: NF3820_high_63
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_63 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 61 - 348
Target Start/End: Complemental strand, 11984787 - 11984500
Alignment:
| Q |
61 |
tcatcaatttagtgtcgaaatcatatgaaaaattcttcaatttaatcttgaacatctttataacacatcataattatatagtttaagaactatatagaga |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11984787 |
tcatcaatttagtgtcgaaatcatatgaaaaattcttcaatttaatcttgaacatcttaataacacatcataattatatagtttaagaactatatagaga |
11984688 |
T |
|
| Q |
161 |
gggtaacattttaaggactaaattgatagtttcttgtaacaaattaactagtatcaaaccatttgggttgaatttgtttgcaggattgcagtggtgactg |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11984687 |
gggtaacattttaaggactaaattgatagtttcttttaacaaattaactagtatcaaaccatttgggttgaatttgtttgcaggattgcagtggtgactg |
11984588 |
T |
|
| Q |
261 |
gagcaaacaaaggaattgggtttgagatagttaagcagttagcttcagctggaatcaaagtggtgcttactgcaagagatgagaaaag |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
11984587 |
gagcaaacaaaggaattgggtttgagatagttaagcagttagcttcagctggaatcaaagttgtgcttacagcaagagatgagaaaag |
11984500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 247 - 348
Target Start/End: Complemental strand, 12014660 - 12014559
Alignment:
| Q |
247 |
tgcagtggtgactggagcaaacaaaggaattgggtttgagatagttaagcagttagcttcagctggaatcaaagtggtgcttactgcaagagatgagaaa |
346 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12014660 |
tgcagtggtgactggagcaaacaaagggattggatttgagatagttaagcagttagcttcagctggaatcaaagtggtgcttactgcaagagatgagaaa |
12014561 |
T |
|
| Q |
347 |
ag |
348 |
Q |
| |
|
|| |
|
|
| T |
12014560 |
ag |
12014559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 247 - 348
Target Start/End: Complemental strand, 11975169 - 11975068
Alignment:
| Q |
247 |
tgcagtggtgactggagcaaacaaaggaattgggtttgagatagttaagcagttagcttcagctggaatcaaagtggtgcttactgcaagagatgagaaa |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11975169 |
tgcagtggtgactggagcaaacaaaggaattgggtttgaaatagttaagcaattagcttcagctggaatcaaagtggtgcttacagcaagagatgagaaa |
11975070 |
T |
|
| Q |
347 |
ag |
348 |
Q |
| |
|
|| |
|
|
| T |
11975069 |
ag |
11975068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 216 - 348
Target Start/End: Complemental strand, 11980275 - 11980143
Alignment:
| Q |
216 |
aaaccatttgggttgaatttgtttgcaggattgcagtggtgactggagcaaacaaaggaattgggtttgagatagttaagcagttagcttcagctggaat |
315 |
Q |
| |
|
||||||| ||||||| |||||| |||||||||||||||||| ||| |||||||||||||||| || |||||||| | ||| ||||||||||||||||| |
|
|
| T |
11980275 |
aaaccatgtgggttgtgtttgttgccaggattgcagtggtgacaggatcaaacaaaggaattggattagagatagtaaggcaattagcttcagctggaat |
11980176 |
T |
|
| Q |
316 |
caaagtggtgcttactgcaagagatgagaaaag |
348 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
11980175 |
caaagtggtgcttacagcaagagatgagaaaag |
11980143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 247 - 348
Target Start/End: Complemental strand, 11992108 - 11992007
Alignment:
| Q |
247 |
tgcagtggtgactggagcaaacaaaggaattgggtttgagatagttaagcagttagcttcagctggaatcaaagtggtgcttactgcaagagatgagaaa |
346 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
11992108 |
tgcagtggtgacaggtgcaaacaaaggaattgggttagagatagtaaagcagttagcttcagctgtaatcaaagtggtgcttacatcaagagatgagaaa |
11992009 |
T |
|
| Q |
347 |
ag |
348 |
Q |
| |
|
|| |
|
|
| T |
11992008 |
ag |
11992007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 247 - 348
Target Start/End: Complemental strand, 12010085 - 12009984
Alignment:
| Q |
247 |
tgcagtggtgactggagcaaacaaaggaattgggtttgagatagttaagcagttagcttcagctggaatcaaagtggtgcttactgcaagagatgagaaa |
346 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||| || |||||||||||||| |
|
|
| T |
12010085 |
tgcagtggtgacaggagcaaacaaaggaattgggttagagatagttaaacagttagcttcagctagaatcaaagtggtgctcacatcaagagatgagaaa |
12009986 |
T |
|
| Q |
347 |
ag |
348 |
Q |
| |
|
|| |
|
|
| T |
12009985 |
ag |
12009984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 247 - 348
Target Start/End: Complemental strand, 12004993 - 12004892
Alignment:
| Q |
247 |
tgcagtggtgactggagcaaacaaaggaattgggtttgagatagttaagcagttagcttcagctggaatcaaagtggtgcttactgcaagagatgagaaa |
346 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| || |||||||| | ||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12004993 |
tgcagtggtgactggatcgaacaaaggaattggattagagatagtaaggcaattagcttcagctggaatcaaagtggtgcttacagcaagagatgagaaa |
12004894 |
T |
|
| Q |
347 |
ag |
348 |
Q |
| |
|
|| |
|
|
| T |
12004893 |
ag |
12004892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 247 - 348
Target Start/End: Complemental strand, 11999775 - 11999674
Alignment:
| Q |
247 |
tgcagtggtgactggagcaaacaaaggaattgggtttgagatagttaagcagttagcttcagctggaatcaaagtggtgcttactgcaagagatgagaaa |
346 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||| ||||||||||| | |||||||||||||| |||||||||||| ||||| || ||||||||||||||| |
|
|
| T |
11999775 |
tgcagtggtgacaggatcaaacaaaggaattggatttgagatagtaaggcagttagcttcagatggaatcaaagttgtgctgacagcaagagatgagaaa |
11999676 |
T |
|
| Q |
347 |
ag |
348 |
Q |
| |
|
|| |
|
|
| T |
11999675 |
ag |
11999674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 289
Target Start/End: Complemental strand, 43494722 - 43494684
Alignment:
| Q |
251 |
gtggtgactggagcaaacaaaggaattgggtttgagata |
289 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
43494722 |
gtggtgacaggagcaaacaaaggaattggatttgagata |
43494684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University