View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3820_high_64 (Length: 363)
Name: NF3820_high_64
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_64 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 20 - 356
Target Start/End: Complemental strand, 19642820 - 19642484
Alignment:
| Q |
20 |
ggtcgtgatgaatggatcaacagttacgcagattttggaaaagttttctttgcaggagacagtgctggtgcaaacattgcacaccacatggctattcgtg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19642820 |
ggtcgtgatgaatggatcaacagttacgcagattttggaaaagttttctttgcaggagacagtgctggtgcaaacattgcacaccacatggctattcgtg |
19642721 |
T |
|
| Q |
120 |
ttggaactgaagggcttcaagggattaacattgaagggattgttttggttcatgcattcttttggggtgtggaaagagttggatctgaggctgagaaacc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19642720 |
ttggaactgaagggcttcaagggattaacattgaagggattgttttggttcatgcattcttttggggtgtggaaagagttggatctgaggctgagaaacc |
19642621 |
T |
|
| Q |
220 |
tgaaaaatatttatcttttgtggataatttatggcgatttgtttgtccaacaagttcgggacccgatgacctgttattgaatccgggtaaggataagaat |
319 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19642620 |
tgaacaatatttatcttttgtggataatttatggcgatttgtttgtccaacaagttcgggacccgatgacatgttattgaatccgggtaaggataagaat |
19642521 |
T |
|
| Q |
320 |
ttggggaggttgggttgtaagagtgttttggtctgtg |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19642520 |
ttggggaggttgggttgtaagagtgttttggtttgtg |
19642484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 25 - 356
Target Start/End: Complemental strand, 33918338 - 33918007
Alignment:
| Q |
25 |
tgatgaatggatcaacagttacgcagattttggaaaagttttctttgcaggagacagtgctggtgcaaacattgcacaccacatggctattcgtgttgga |
124 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
33918338 |
tgatgaatggatcaaccgttatgcagattttggaaaaatgttctttgcaggagacagtgctggtgcaaacattgcaaatcacatggctattcgtgttgga |
33918239 |
T |
|
| Q |
125 |
actgaagggcttcaagggattaacattgaagggattgttttggttcatgcattcttttggggtgtggaaagagttggatctgagg---ctgagaaacctg |
221 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||| |||||||| ||| |
|
|
| T |
33918238 |
actcaagggcttcaagggattaaccttgaagggattgttttggttcatacattcttttggggtgttgaaagggttggatctgaggctactgagaaatctg |
33918139 |
T |
|
| Q |
222 |
aaaaatatttatcttttgtggataatttatggcgatttgtttgtccaacaagttcgggacccgatgacctgttattgaatccgggtaaggataagaattt |
321 |
Q |
| |
|
|| | |||||||| | |||||||||||| | |||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
33918138 |
---aacacttatctttggctgataatttatggaggtttgtttgtccaacaagttcgggatccgatgacccgtttttgaatccgggtaaggataagaattt |
33918042 |
T |
|
| Q |
322 |
ggggaggttgggttgtaagagtgttttggtctgtg |
356 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||| |
|
|
| T |
33918041 |
ggggaggttgggttgtaagagagttttggtttgtg |
33918007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University