View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_high_69 (Length: 353)
Name: NF3820_high_69
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_69 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 16 - 339
Target Start/End: Complemental strand, 46816067 - 46815748
Alignment:
| Q |
16 |
gaagaacaaggaaccgtccaaataaacccagaacccaaattcaacttgaattaaaagaaagnnnnnnnnntgagcctgaattcaaaataaaattcgctcc |
115 |
Q |
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| T |
46816067 |
gaagaacaaggaaccgtccaaataaacccagaacccaaattcaacttgaattgaaagaaa----aaaaaatgagcctgaattcaaaataaaattcgctcc |
46815972 |
T |
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| Q |
116 |
ctgaatccaaaacgacaaagaatcacttgaaacgaaatcgtccaagtgcagttcgcaaaaccgaaaatcgcaacacgaaatccaccagcgatgtatggac |
215 |
Q |
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| T |
46815971 |
ctgaatccaaaacgacaaagaatcacttgaaatgaaatcgtccaagtgtagttcgcaaaaccgaaaatggcaacacgaaatccaccagcgacgaatggac |
46815872 |
T |
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| Q |
216 |
gaaggttatgtatgttgctgcgttttcagaatcaaatcgatggaataaatttggagctgtggtgcgattgggtttgataattagggatagagatgaaatt |
315 |
Q |
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| T |
46815871 |
gaaggttatgtatgttgctgcgttttcagaatcaaatcgatggaataaatttggagctgtggtgcgattgggtttgataattagggatagagatgaaatt |
46815772 |
T |
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| Q |
316 |
gaggatttgatttgttggagaata |
339 |
Q |
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| T |
46815771 |
gaggatttgatttgttggagaata |
46815748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 339
Target Start/End: Original strand, 13936849 - 13936881
Alignment:
| Q |
307 |
gatgaaattgaggatttgatttgttggagaata |
339 |
Q |
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| T |
13936849 |
gatgaaattgaggatttgatttgttggagaata |
13936881 |
T |
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