View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3820_high_71 (Length: 351)
Name: NF3820_high_71
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_71 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 20 - 341
Target Start/End: Complemental strand, 46377596 - 46377275
Alignment:
| Q |
20 |
gttcatttttaatcttcccatcttaaaattaaataactcggttatcttgagaaacgtttgtgcattaaacataaaatcagaatagtatctacctggatgc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46377596 |
gttcatttttaatcttcccatcttaaaattaaataactcggttatcttgagaaacgtttgtgcattaaacataaaatcagaatagtatctacctggatgc |
46377497 |
T |
|
| Q |
120 |
cagcatgactgcagagataaaaatcaaattctgtcggatggcaaattttagtatcgacaacggtccctgaaagacacttatattaacaaaatatttcaat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46377496 |
cagcatgactgcagagataaaaatcaaattctgtcggatggcaaattttagtatcgacaacggtccctgaaagacacttatattaacaaaatatttcaat |
46377397 |
T |
|
| Q |
220 |
cttatttgacaataattttcaaaacaaaaagattctgaaatagtttatgtatgcaatttagtcatgttcaacttaccaggcaaaatattcccgctcttat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46377396 |
cttatttgacaataattttcaaaacaaaaagattctgaaatagtttatgtatgcaatttagtcatgttcaacttaccaggcaaaatattcccgctcttat |
46377297 |
T |
|
| Q |
320 |
cggtactgctcctgtccctatg |
341 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
46377296 |
cggtactgctcctgtccctatg |
46377275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 109 - 192
Target Start/End: Complemental strand, 15412423 - 15412340
Alignment:
| Q |
109 |
tacctggatgccagcatgactgcagagataaaaatcaaattctgtcggatggcaaattttagtatcgacaacggtccctgaaag |
192 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||| ||||| ||||| || |||||||| |
|
|
| T |
15412423 |
tacctggatgccagcgtgactgcagagataaaaatcaaactctgttggatgacaaattttggtatcaacaacagttcctgaaag |
15412340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 94 - 333
Target Start/End: Original strand, 46834105 - 46834350
Alignment:
| Q |
94 |
aatcagaatagtatctacctggatgccagcatgactgcagagataaaaatcaaattctgtcggatggcaaattttagtatcgacaacggtccctgaaaga |
193 |
Q |
| |
|
||||| |||| ||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
46834105 |
aatcaaaataatatctacttggttgccagcatgactgcagagataaaagtcaaattctgtcggatggcaaattttagtatcgacaacagtacctgaaaga |
46834204 |
T |
|
| Q |
194 |
cactt--atattaacaaaatatttcaatcttatttgacaataattttcaaaacaaaaagattctgaaatagtt----tatgtatgcaatttagtcatgtt |
287 |
Q |
| |
|
|| | | ||||| ||||||||||||||||||| |||||||| ||| | |||||| | ||| ||||||| || ||||||||||||||||| ||||| |
|
|
| T |
46834205 |
catataaaaattaagaaaatatttcaatcttattcgacaataactttaagaacaaacacattatgaaataatttatgtatgtatgcaatttagtaatgtt |
46834304 |
T |
|
| Q |
288 |
caacttaccaggcaaaatattcccgctcttatcggtactgctcctg |
333 |
Q |
| |
|
| ||||||||||||| ||||| || |||||||| |||||||||||| |
|
|
| T |
46834305 |
ccacttaccaggcaatatatttccactcttatcagtactgctcctg |
46834350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 46833409 - 46833487
Alignment:
| Q |
20 |
gttcatttttaatcttcccatcttaaaattaaataactc-ggttatcttgagaaacgtttgtgcattaaacataaaatca |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
46833409 |
gttcatttttaatcttcccatcttaaaattaaataactcgggttatcttgagaaacg-ttgtgcattaaacatcaaatca |
46833487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 28767571 - 28767489
Alignment:
| Q |
109 |
tacctggatgccagcatgactgcagagataaaaatcaaattctgtcggatggcaaattttagtatcgacaacggtccctgaaa |
191 |
Q |
| |
|
|||||| || |||||||| ||||| |||||||| ||||||||||| |||||||| || |||| ||| ||||| || ||||||| |
|
|
| T |
28767571 |
tacctgaattccagcatggctgcaaagataaaagtcaaattctgtgggatggcagatcttagaatccacaacagtacctgaaa |
28767489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University