View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3820_high_76 (Length: 339)
Name: NF3820_high_76
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_76 |
 |  |
|
Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 4 - 322
Target Start/End: Complemental strand, 9603185 - 9602871
Alignment:
| Q |
4 |
tcatctggatcaccaagatcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattctt |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9603185 |
tcatctggatcaccaagatcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattctt |
9603086 |
T |
 |
| Q |
104 |
cttgtctgtagtagactaatggagctggtgtttgacttggaagatatgtctgtaacaaagtcaattaattaatttgttttatttacttaagaaaaatgta |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9603085 |
cttgtctgtagtagactaatggagctggtgtttgacttggaagatatgtctgtaacaaagtcaatt----aatttgttttatttacttaagaaaaatgta |
9602990 |
T |
 |
| Q |
204 |
aatgtatttaaggatttgaagcttacatcattggtaaagaagatgcgatcctttttgtagtttttgaaattgtaaatccatgaattgcaaacaaattcaa |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9602989 |
aatgtatttaaggatttgaagcttacatcattggtaaagaagatgcgatcttttttgtagtttttgaaattgtaaatccatgaattgcaaacaaattcaa |
9602890 |
T |
 |
| Q |
304 |
cggattcatgattgggaat |
322 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
9602889 |
cggattcatgattgggaat |
9602871 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 7e-37; HSPs: 19)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 12 - 154
Target Start/End: Original strand, 6364468 - 6364610
Alignment:
| Q |
12 |
atcaccaagatcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtctg |
111 |
Q |
| |
|
|||||| | |||||||||||||||||||||||| | |||||||||||| || || | |||||| ||||||||||||| | | | |||||||||||||||| |
|
|
| T |
6364468 |
atcacccaaatcattgtagacatcataatcatatattctttcccattccttacgctctccagttccatctcctcttaaagtcttcaattcttcttgtctg |
6364567 |
T |
 |
| Q |
112 |
tagtagactaatggagctggtgtttgacttggaagatatgtct |
154 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||| ||||||| |
|
|
| T |
6364568 |
tagtagactaaaggagctggtgtttcacttggaaggtatgtct |
6364610 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 6353604 - 6353737
Alignment:
| Q |
21 |
atcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtctgtagtagact |
120 |
Q |
| |
|
||||||||||||||| |||||||| | |||||||||||| || || | |||||| ||||||||||||| | | | ||||||||||||||||||||| ||| |
|
|
| T |
6353604 |
atcattgtagacatcgtaatcatatattctttcccattccttgcgctctccagttccatctcctcttaaagtcttcaattcttcttgtctgtagtacact |
6353703 |
T |
 |
| Q |
121 |
aatggagctggtgtttgacttggaagatatgtct |
154 |
Q |
| |
|
|||||||| ||||||| ||||||||| ||||||| |
|
|
| T |
6353704 |
aatggagccggtgtttcacttggaaggtatgtct |
6353737 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 6290512 - 6290645
Alignment:
| Q |
21 |
atcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtctgtagtagact |
120 |
Q |
| |
|
||||||||||||||| |||||||| | |||||||||||| || || | ||| || ||||||||||||| | | | ||||||||||||||| ||||| ||| |
|
|
| T |
6290512 |
atcattgtagacatcgtaatcatatattctttcccattccttgcgctctcctgttccatctcctcttaaagtcttcaattcttcttgtctatagtacact |
6290611 |
T |
 |
| Q |
121 |
aatggagctggtgtttgacttggaagatatgtct |
154 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||| |
|
|
| T |
6290612 |
aatggagctggtgtttcacttggaaggtatgtct |
6290645 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 154
Target Start/End: Original strand, 6275749 - 6275893
Alignment:
| Q |
10 |
ggatcaccaagatcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtc |
109 |
Q |
| |
|
|||||||| | ||||||||||||||| || ||||| | |||||||||||||| || | ||| || ||||||||||||| | | | ||| |||||||||| |
|
|
| T |
6275749 |
ggatcacccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactcttcttgtc |
6275848 |
T |
 |
| Q |
110 |
tgtagtagactaatggagctggtgtttgacttggaagatatgtct |
154 |
Q |
| |
|
| |||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
6275849 |
tatagtagactaatggaggtggtgtttcacttggaagatatgtct |
6275893 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 7460677 - 7460809
Alignment:
| Q |
22 |
tcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtctgtagtagacta |
121 |
Q |
| |
|
||||||||||||||||||||||| | ||| |||||||| || || | ||| || ||||||||||||| | | | ||||||||||||||||||||| |||| |
|
|
| T |
7460677 |
tcattgtagacatcataatcatatattctgtcccattccttgcgctctcccgttccatctcctcttaaagtcttcaattcttcttgtctgtagtacacta |
7460776 |
T |
 |
| Q |
122 |
atggagctggtgtttgacttggaagatatgtct |
154 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| |
|
|
| T |
7460777 |
atggagctggtgttgcacttggaaggtatgtct |
7460809 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 33 - 169
Target Start/End: Original strand, 6458279 - 6458415
Alignment:
| Q |
33 |
atcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtctgtagtagactaatggagctggt |
132 |
Q |
| |
|
|||||||||||||||||| ||| |||||| || | |||||| ||||||||||||||| | ||||| ||||||| ||| || | ||||||||||||| |
|
|
| T |
6458279 |
atcataatcataaactctatccgcttctttgcgctctccagttccatctcctcttagagtctgcaactcttcttctctataatgatttaatggagctggt |
6458378 |
T |
 |
| Q |
133 |
gtttgacttggaagatatgtctgtaacaaagtcaatt |
169 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
6458379 |
gtttgacttggaagatacgtctgtaacaaattcaatt |
6458415 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 6392100 - 6392215
Alignment:
| Q |
21 |
atcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtctgtagtagact |
120 |
Q |
| |
|
|||||||||||||||||||||||| | ||| |||||||| || || | |||||| ||||||||||||| | | | ||||||||||||||||||||| | | |
|
|
| T |
6392100 |
atcattgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattcttcttgtctgtagtacagt |
6392199 |
T |
 |
| Q |
121 |
aatggagctggtgttt |
136 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
6392200 |
aatggagctggtgttt |
6392215 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 7 - 154
Target Start/End: Original strand, 6371294 - 6371441
Alignment:
| Q |
7 |
tctggatcaccaagatcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttctt |
106 |
Q |
| |
|
||||| ||||| | ||||||||||||||| || ||||| | || ||||||||||| || | || || ||||||||||||| | | | ||| ||||||| |
|
|
| T |
6371294 |
tctggttcacccaaatcattgtagacatcgtagtcatagatcctatcccattctttgcgctcacccgttccatctcctcttaaagtcttcaactcttctt |
6371393 |
T |
 |
| Q |
107 |
gtctgtagtagactaatggagctggtgtttgacttggaagatatgtct |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||| ||||||| |
|
|
| T |
6371394 |
gtctgtagtagactaatggagctggtgtttcacttagaaggtatgtct |
6371441 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 6452172 - 6452322
Alignment:
| Q |
19 |
agatcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtctgtagtaga |
118 |
Q |
| |
|
|||||||| || ||||||||||| || | || ||||||||||| |||| ||| || ||||||||||||||||| ||||| ||||||| ||| ||| |
|
|
| T |
6452172 |
agatcattataaacatcataatcgtatatcctatcccattctttgcgttctccggttccatctcctcttagattctgcaactcttcttctctaaagtgat |
6452271 |
T |
 |
| Q |
119 |
ctaatggagctggtgtttgacttggaagatatgtctgtaacaaagtcaatt |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||| ||| |||||| |
|
|
| T |
6452272 |
ttaatggagctggtgtttgacttggaagatacgcctgtaataaattcaatt |
6452322 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 76 - 154
Target Start/End: Original strand, 6322676 - 6322754
Alignment:
| Q |
76 |
ccatctcctcttagattttgcaattcttcttgtctgtagtagactaatggagctggtgtttgacttggaagatatgtct |
154 |
Q |
| |
|
||||||||||||| | | | ||||||||||| ||| ||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
6322676 |
ccatctcctcttaaagtcttcaattcttcttctctatagtagactaatggagctggtgtttcacttggaaggtatgtct |
6322754 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 6333243 - 6333313
Alignment:
| Q |
76 |
ccatctcctcttagattttgcaattcttcttgtctgtagtagactaatggagctggtgtttgacttggaag |
146 |
Q |
| |
|
||||||||||||| | | | ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6333243 |
ccatctcctcttaaagtcttcaattcttcttgtctgtagtagactaatggagctggtgtttcgcttggaag |
6333313 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 222 - 300
Target Start/End: Original strand, 6452406 - 6452484
Alignment:
| Q |
222 |
aagcttacatcattggtaaagaagatgcgatcctttttgtagtttttgaaattgtaaatccatgaattgcaaacaaatt |
300 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||| ||||||| ||||||| ||||||||| ||| |||||| |
|
|
| T |
6452406 |
aagcttacatcattggtgaagaagatgcgattgtttttgtagcttttgaagttgtaaacccatgaattacaatcaaatt |
6452484 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 6425294 - 6425427
Alignment:
| Q |
21 |
atcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtctgtagtagact |
120 |
Q |
| |
|
||||||||||||||| |||||||| | ||||||||||| || || | ||| | ||||||||||||| | | | ||| ||||||||||| ||||| || |
|
|
| T |
6425294 |
atcattgtagacatcgtaatcatagatcctttcccattccttgcgctctccttttccatctcctcttaaagtcttcaactcttcttgtctatagtacacc |
6425393 |
T |
 |
| Q |
121 |
aatggagctggtgtttgacttggaagatatgtct |
154 |
Q |
| |
|
|||||||| ||||||| ||||||||| ||||||| |
|
|
| T |
6425394 |
aatggagccggtgtttcacttggaaggtatgtct |
6425427 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 143
Target Start/End: Original strand, 6264935 - 6265057
Alignment:
| Q |
21 |
atcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtctgtagtagact |
120 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||| || | || || ||||||||||||| | | | ||| ||| |||||| |||||||| |
|
|
| T |
6264935 |
atcattgtaaacatcataatcataaactctgtcccattctttgcgctcccccgttccatctcctcttaaagtcttcaactctaattgtctatagtagaca |
6265034 |
T |
 |
| Q |
121 |
aatggagctggtgtttgacttgg |
143 |
Q |
| |
|
| |||||| ||||||| |||||| |
|
|
| T |
6265035 |
agtggagcaggtgtttcacttgg |
6265057 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 6411264 - 6411394
Alignment:
| Q |
21 |
atcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtctgtagtagact |
120 |
Q |
| |
|
|||||||||||||||||||||||| | ||| |||||| | || || | |||||| ||||||||||||| | | | ||||||||||| ||||||| ||| |
|
|
| T |
6411264 |
atcattgtagacatcataatcatatattctgtcccataccttacgctctccagttccatctcctcttaaagtcttcaattcttctttgatgtagtacact |
6411363 |
T |
 |
| Q |
121 |
aatggagctggtgtttgacttggaagatatg |
151 |
Q |
| |
|
||||| ||||| |||||||||||| |||| |
|
|
| T |
6411364 |
aatggttgtggtgcttgacttggaaggtatg |
6411394 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 311
Target Start/End: Original strand, 6458587 - 6458673
Alignment:
| Q |
225 |
cttacatcattggtaaagaagatgcgatcctttttgtagtttttgaaattgtaaatccatgaattgcaaacaaattcaacggattca |
311 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||| ||||||| ||||||| |||||| || |||| ||| | ||| |||||| |
|
|
| T |
6458587 |
cttacatcattggtgaagaagatgcgatcttttttgtaacttttgaagttgtaaacccatgagttacaaataaactgaacagattca |
6458673 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 7460979 - 7461043
Alignment:
| Q |
234 |
ttggtaaagaagatgcgatcctttttgtagtttttgaaattgtaaatccatgaattgcaaacaaa |
298 |
Q |
| |
|
|||| |||||||||||| ||| ||||||| ||||| |||||| ||||||||| ||||||||||| |
|
|
| T |
7460979 |
ttggcaaagaagatgcggtccgttttgtactttttagaattgtgaatccatgagttgcaaacaaa |
7461043 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 6290734 - 6290798
Alignment:
| Q |
234 |
ttggtaaagaagatgcgatcctttttgtagtttttgaaattgtaaatccatgaattgcaaacaaa |
298 |
Q |
| |
|
|||| |||||||||||| || |||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
6290734 |
ttggcaaagaagatgcgttcagttttgtagttttgagcattgtaaatccatgagttgcaaacaaa |
6290798 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 6353969 - 6354033
Alignment:
| Q |
234 |
ttggtaaagaagatgcgatcctttttgtagtttttgaaattgtaaatccatgaattgcaaacaaa |
298 |
Q |
| |
|
|||| |||||||||||| || ||||||| ||||| |||||||||||||||| ||||| ||||| |
|
|
| T |
6353969 |
ttggcaaagaagatgcggtcggttttgtactttttagaattgtaaatccatgagttgcagacaaa |
6354033 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 211 - 322
Target Start/End: Original strand, 32023912 - 32024023
Alignment:
| Q |
211 |
ttaaggatttgaagcttacatcattggtaaagaagatgcgatcctttttgtagtttttgaaattgtaaatccatgaattgcaaacaaattcaacggattc |
310 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| | ||||||||||||| ||||||||| |
|
|
| T |
32023912 |
ttaaggatttggagcttacatcattggtaaagaagatgcgatcctttttgtattttttgaagttgtaaatccacaagttgcaaacaaattgaacggattc |
32024011 |
T |
 |
| Q |
311 |
atgattgggaat |
322 |
Q |
| |
|
| |||| ||||| |
|
|
| T |
32024012 |
aagattaggaat |
32024023 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 42694396 - 42694526
Alignment:
| Q |
21 |
atcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtctgtagtagact |
120 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||| |||| ||| || ||||||||||||| ||| | ||||||||||| ||| || | |||| |
|
|
| T |
42694396 |
atcattgtagacatcataatcatagattctttcccattctttgcgttctcctgttccatctcctcttaaattgttcaattcttcttctctataatggact |
42694495 |
T |
 |
| Q |
121 |
aatggagctggtgtttgacttggaagatatg |
151 |
Q |
| |
|
|||||||| ||||||| ||| |||||||||| |
|
|
| T |
42694496 |
aatggagccggtgtttcactaggaagatatg |
42694526 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 42687206 - 42687133
Alignment:
| Q |
76 |
ccatctcctcttagattttgcaattcttcttgtctgtagtagactaatggagctggtgtttgacttggaagata |
149 |
Q |
| |
|
|||||||| |||| ||||||||||||||||| ||| || | ||||| ||||| |||||||| |||||||||||| |
|
|
| T |
42687206 |
ccatctccccttaaattttgcaattcttcttctctatacttgactagtggagatggtgtttcacttggaagata |
42687133 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 35706561 - 35706521
Alignment:
| Q |
10 |
ggatcaccaagatcattgtagacatcataatcataaactct |
50 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35706561 |
ggatctccaagatcattgtagacatcatagtcataaactct |
35706521 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 35722383 - 35722349
Alignment:
| Q |
10 |
ggatcaccaagatcattgtagacatcataatcata |
44 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35722383 |
ggatctccaagatcattgtagacatcataatcata |
35722349 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 35728277 - 35728313
Alignment:
| Q |
10 |
ggatcaccaagatcattgtagacatcataatcataaa |
46 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
35728277 |
ggatctccaagatcattgtagacatcatagtcataaa |
35728313 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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