View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_high_8 (Length: 561)
Name: NF3820_high_8
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 1 - 545
Target Start/End: Complemental strand, 42413419 - 42412875
Alignment:
| Q |
1 |
gtcatagcactggctcacaatttcttggaatattatgtgatttaccattggacaactcttctagtagagtaacagcaattgatcttgatggcattggtta |
100 |
Q |
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| T |
42413419 |
gtcatagcactggctcacaatttcttggaatattatgtgatttaccattggacaactcttctagtagagtaacagcaattgatcttgatggcattggtta |
42413320 |
T |
|
| Q |
101 |
tgaaggattcataacaccagttatagggaacctaacagagctaacaatactcaatctcaacaataacaagtttagaggaccaataccagaaaccattggc |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42413319 |
tgaaggattcttaacaccagttatagggaacctaacagagctaacaatactcaatctcaacaataacaagtttagaggaccaataccagaaaccattggc |
42413220 |
T |
|
| Q |
201 |
aatttgagaaaactcactagactcaccttctcagataactttttcactggtggtattcctcaagaaatcattgaacttaagagacttgaatatcttgatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42413219 |
aatttgagaaaactcactagactcaccttctcagataactttttcactggtggtattcctcaagaaatcattgaacttaagagacttgaatatcttgatc |
42413120 |
T |
|
| Q |
301 |
tttccgcgaacaggctttccggcacaatcccttctaatatgacaggtttgagaagcttaacttacttgagcttatcaaacaataattttccaggtagagt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
42413119 |
tttccgcgaacaggctttccggcacaatcccttctaatatgacaggtttgagaagcttaacttacttgagcttatcaaacaataacttttcaggtagagt |
42413020 |
T |
|
| Q |
401 |
ccaaaatctcactggactatggaatttgaacacactagacattagttacaaccagtttttcggcaatctaccaaatcttccagtgagtttaagaaacata |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42413019 |
ccaaaatctcactggactatggaatttgaacacactagacattagttacaaccagtttttcggcaatctaccaaatcttccagtgagtttaagaaacata |
42412920 |
T |
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| Q |
501 |
tatctcagccataatattttttcaggagacataacacctcttaag |
545 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42412919 |
tatctcagccataatattttttcaggagacataacacctcttaag |
42412875 |
T |
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