View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_high_80 (Length: 332)
Name: NF3820_high_80
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_80 |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 14 - 332
Target Start/End: Original strand, 6246778 - 6247096
Alignment:
| Q |
14 |
agaggaatcaaagatatcaaacagtagtacaggtcctggttcgatttcgaaaggttcgaggagatggaaattgagtgatttattgttgtttagaagtgct |
113 |
Q |
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| T |
6246778 |
agaggaatcaaagatatcaaacagtagtacaggtcctggttcgatttcgaagggttcgaggagatggaaattgagtgatttattgttgtttagaagtgct |
6246877 |
T |
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| Q |
114 |
tcagaaggaagaggttcaagcaaggatccattaaagaaatattttgttgggtataagaagaatactagtgaagaagttaaaggttcaagcagctttagat |
213 |
Q |
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| T |
6246878 |
tcagaaggaagaggttcaagcaaggatccattaaagaaatattttgttgggtataagaagaatactagtgaagaagttaaaggttcaagcagctttagat |
6246977 |
T |
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| Q |
214 |
cttctgattcattttcacatcatgggtcaagaaaaaaggctcaagtttcagctcatgaaatgcattatgctatgaagaaagctgagtcacaagatatgaa |
313 |
Q |
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| T |
6246978 |
cttctgattcattttcacatcatgggtcaagaaaaaaggctcaagtttcagctcatgaaatgcattatgctatgaagaaagctgagtcacaagatatgaa |
6247077 |
T |
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| Q |
314 |
gaagagaactttcttgcct |
332 |
Q |
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| T |
6247078 |
gaagagaactttcttgcct |
6247096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 258 - 332
Target Start/End: Complemental strand, 46630096 - 46630022
Alignment:
| Q |
258 |
gtttcagctcatgaaatgcattatgctatgaagaaagctgagtcacaagatatgaagaagagaactttcttgcct |
332 |
Q |
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| T |
46630096 |
gtttctgcacatgaattgcattatgctaggaaaaaagcagagtctgaagatttgaagaagagaactttcttgcct |
46630022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 145
Target Start/End: Complemental strand, 46630274 - 46630206
Alignment:
| Q |
77 |
atggaaattgagtgatttattgttgtttagaagtgcttcagaaggaagaggttcaagcaaggatccatt |
145 |
Q |
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| T |
46630274 |
atggagattgagagattttttgttgtttcgtagtgcatcagaaggaagaggaacaagcaaagatccatt |
46630206 |
T |
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