View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3820_high_84 (Length: 316)
Name: NF3820_high_84
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_84 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 9 - 316
Target Start/End: Complemental strand, 15571263 - 15570956
Alignment:
| Q |
9 |
agcaaaggcgtggcgataaacgacgaggacatagtggctcattccttggttgagggaaaccttagtgataatgttcataccagcatagccaaattgtaaa |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15571263 |
agcaaaagcgtggcgataaacgacgaggacatagtggctcattccttggttgagggaaaccttagtgataatgttcataccagcatagccaaattgtaaa |
15571164 |
T |
|
| Q |
109 |
catatcatagcagtgtaatgtttcatgttctcaaaggaatttgatttttccatagccatttttctttatttatttgtgaagaaactagataggagagttg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15571163 |
catatcatagcagtgtaatgtttcatgttctcaaaggaatttgatttttccatagccatttttctttatttatttgtgaagaaactagataggagagttg |
15571064 |
T |
|
| Q |
209 |
agcaaataagagtaatattgtagtatagagaaaagaggaagaacacttgcaagaaggtttgtgtttcttcctaaggagtagcatgggtagggttctatta |
308 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15571063 |
agcaaattagagtaatattgtagtatagagaaaagaggaagaacacttgcaagaaggtttgtgtttcttcctaaggagtagcatgggtagggttctatta |
15570964 |
T |
|
| Q |
309 |
tttatacc |
316 |
Q |
| |
|
|||||||| |
|
|
| T |
15570963 |
tttatacc |
15570956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 108
Target Start/End: Original strand, 3434866 - 3434964
Alignment:
| Q |
10 |
gcaaaggcgtggcgataaacgacgaggacatagtggctcattccttggttgagggaaaccttagtgataatgttcataccagcatagccaaattgtaaa |
108 |
Q |
| |
|
||||| || ||||||||||| |||||||||||||| ||||| ||| ||||| |||| ||| || || |||||||| || ||||||||||| |||||| |
|
|
| T |
3434866 |
gcaaaagcatggcgataaacaacgaggacatagtgactcatccctccattgagagaaagcttggttatgatgttcatgcctgcatagccaaactgtaaa |
3434964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University