View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3820_high_88 (Length: 305)
Name: NF3820_high_88
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_88 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 11 - 289
Target Start/End: Original strand, 6275330 - 6275608
Alignment:
| Q |
11 |
acatcatcaaagctgttaaattctggcttattgaattgtaatgtaattgcagattgtaattgaggtatgacattttgagatactgatttgagtatgtaaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6275330 |
acatcatcaaagctgttaaattctggcttattgaattgtaatgtaattgcagattgtaattgaggtatgacattttgagatactgatttgagtatgtaaa |
6275429 |
T |
|
| Q |
111 |
caagaaaatctgaagacttcaagtgaccaaatgattcatctcttggaagataaatatactcgctccgtctctcacttttaggatctgcacaaatacaaaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6275430 |
caagaaaatctgaagacttcaagtgaccaaatgattcatctcttggaagataaatatactcgctccgtctctcacttttaggatctgcacaaatacaaaa |
6275529 |
T |
|
| Q |
211 |
atagcaaaatatgcattagcaagaggaatgtcttagaatcataaacaaatgaaaatttggatcaacatacttaagatat |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6275530 |
atagcaaaatatgcattagcaagaggaatgtcttagaatcataaacaaatgaaaatttggatcaacatacttaagatat |
6275608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 11 - 210
Target Start/End: Original strand, 6322197 - 6322396
Alignment:
| Q |
11 |
acatcatcaaagctgttaaattctggcttattgaattgtaatgtaattgcagattgtaattgaggtatgacattttgagatactgatttgagtatgtaaa |
110 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||| |
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| T |
6322197 |
acatcatcaaagctattaaattctggcttattgagttgtaatgtaattgcagattgtaattgaggtatgaaactttgagaagctgatttgagtatgtaaa |
6322296 |
T |
|
| Q |
111 |
caagaaaatctgaagacttcaagtgaccaaatgattcatctcttggaagataaatatactcgctccgtctctcacttttaggatctgcacaaatacaaaa |
210 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| |||| | | ||| ||||||||||||||||||||||| || |||||||| |
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| T |
6322297 |
caagaaaatctgaagacttcaagtgaccaaatgcttcatctcttggaacgtaaacaaagtcgtcccgtctctcacttttaggatctgttcacatacaaaa |
6322396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 6332779 - 6332960
Alignment:
| Q |
9 |
ggacatcatcaaagctgttaaattctggcttattgaattgtaatgtaattgcagattgtaattgaggtatgacattttgagatactgatttgagtatgta |
108 |
Q |
| |
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||||||| ||||| ||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||||| |||||||||||| ||||||| ||||| || |
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| T |
6332779 |
ggacatcttcaaaagtgttaaactctggctgattgaattgtaatgtaagtgcagatcgtaattgaggtataacattttgagatgctgatttcagtatata |
6332878 |
T |
|
| Q |
109 |
aacaagaaaatctgaagacttcaagtgaccaaatgattcatctcttggaagataaatatactcgctccgtctctcactttta |
190 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||||||||||| |||| | | |||||||| |||||||||||| |
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| T |
6332879 |
aacaagaaagtctgaagacttcaagtggccaaatgattcatctcttggaatgtaaacaaagtcgctccgactctcactttta |
6332960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 6353181 - 6353326
Alignment:
| Q |
19 |
aaagctgttaaattctggcttattgaattgtaatgtaattgcagattgtaattgaggtatgacattttgagatactgatttgagtatgtaaacaagaaaa |
118 |
Q |
| |
|
|||| ||||||| || || ||||||| ||||||||||| | ||||| | |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6353181 |
aaaggtgttaaactcagggttattgagttgtaatgtaactacagatctcagttgaggtatgacattttgagatgctgatttgagtatgtaaacaagaaag |
6353280 |
T |
|
| Q |
119 |
tctgaagacttcaagtgaccaaatgattcatctcttggaagataaa |
164 |
Q |
| |
|
||||| ||||| ||| ||||| ||||||||||||||||| |||| |
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|
| T |
6353281 |
tctgatgactttgtgtgtccaaaagattcatctcttggaaggtaaa |
6353326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 208
Target Start/End: Original strand, 6363969 - 6364168
Alignment:
| Q |
11 |
acatcatcaaagctgttaaattctggcttattgaattgtaatgtaattgcagattgtaattgaggtatgacattttgagatactgatttgagtatgtaaa |
110 |
Q |
| |
|
||||| |||||| ||||||| || |||| || |||||||||||||| | |||| |||| |||||||||||||||||||| | ||||||||||||| || |
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| T |
6363969 |
acatcttcaaaggtgttaaactcaggctcatggaattgtaatgtaactatagatcttaatcgaggtatgacattttgagatgcagatttgagtatgtgaa |
6364068 |
T |
|
| Q |
111 |
caagaaaatctgaagacttcaagtgaccaaatgattcatctcttggaagataaatatactcgctccgtctctcacttttaggatctg--cacaaatacaa |
208 |
Q |
| |
|
||||||| ||||| ||||| ||| |||||||||||||||||||| || |||| | || || || |||||||| |||||||||| ||||||||||| |
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| T |
6364069 |
caagaaagtctgatgactttgtgtgtccaaatgattcatctcttgggaggtaaacagtgtcacttcgactctcactcttaggatctgttcacaaatacaa |
6364168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 73 - 197
Target Start/End: Original strand, 6424909 - 6425033
Alignment:
| Q |
73 |
aggtatgacattttgagatactgatttgagtatgtaaacaagaaaatctgaagacttcaagtgaccaaatgattcatctcttggaagataaatatactcg |
172 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||| || ||||||| ||||||||||| ||| ||||||| |||||||||||||| |||| | || |
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| T |
6424909 |
aggtatgatattttgagatgctgatttgagtatgaaagcaagaaagtctgaagactttgtgtgtccaaatgcctcatctcttggaaggtaaacagtgccg |
6425008 |
T |
|
| Q |
173 |
ctccgtctctcacttttaggatctg |
197 |
Q |
| |
|
||||| |||||||| |||||||||| |
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|
| T |
6425009 |
ctccgactctcactcttaggatctg |
6425033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 197
Target Start/End: Original strand, 6289818 - 6289939
Alignment:
| Q |
76 |
tatgacattttgagatactgatttgagtatgtaaacaagaaaatctgaagacttcaagtgaccaaatgattcatctcttggaagataaatatactcgctc |
175 |
Q |
| |
|
||||| || ||||||| ||||||| |||| || | ||||||| |||||||||||| |||| ||||||||||||||||||||| |||| | | || || |
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|
| T |
6289818 |
tatgaaatcttgagatgctgatttcagtaggttatcaagaaattctgaagacttcttgtgatcaaatgattcatctcttggaatgtaaacaaagccgttc |
6289917 |
T |
|
| Q |
176 |
cgtctctcacttttaggatctg |
197 |
Q |
| |
|
|| ||||||||||||||||||| |
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|
| T |
6289918 |
cgactctcacttttaggatctg |
6289939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 197
Target Start/End: Original strand, 7460153 - 7460257
Alignment:
| Q |
93 |
ctgatttgagtatgtaaacaagaaaatctgaagacttcaagtgaccaaatgattcatctcttggaagataaatatactcgctccgtctctcacttttagg |
192 |
Q |
| |
|
|||||||||||| ||| ||||||| || || |||||||||||||||||||||||||||||||||| |||||| || || || |||||||| ||||| |
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|
| T |
7460153 |
ctgatttgagtacataaccaagaaagtcagatgacttcaagtgaccaaatgattcatctcttggaacgtaaatagcgtcacttcgactctcactcttagg |
7460252 |
T |
|
| Q |
193 |
atctg |
197 |
Q |
| |
|
||||| |
|
|
| T |
7460253 |
atctg |
7460257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 7471729 - 7471794
Alignment:
| Q |
93 |
ctgatttgagtatgtaaacaagaaaatctgaagacttcaagtgaccaaatgattcatctcttggaa |
158 |
Q |
| |
|
|||||||||||| ||| ||||||| || || |||||||||||||||||||||||||||||||||| |
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|
| T |
7471729 |
ctgatttgagtacataaccaagaaagtcagatgacttcaagtgaccaaatgattcatctcttggaa |
7471794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 6451892 - 6451945
Alignment:
| Q |
112 |
aagaaaatctgaagacttcaagtgaccaaatgattcatctcttggaagataaat |
165 |
Q |
| |
|
|||||| ||||| ||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
6451892 |
aagaaagtctgatgacttcaagtgaccaaaattttcatctcttggaacataaat |
6451945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 197
Target Start/End: Original strand, 42694042 - 42694159
Alignment:
| Q |
80 |
acattttgagatactgatttgagtatgtaaacaagaaaatctgaagacttcaagtgaccaaatgattcatctcttggaagataaatatactcgctccgtc |
179 |
Q |
| |
|
|||||||||||||||| ||| ||| ||| |||||||||||| || |||||||||||||| | |||||||||||||||||| | | | || |||| | |
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|
| T |
42694042 |
acattttgagatactgctttcagtccataagtaagaaaatctgatgatttcaagtgaccaaaagcttcatctcttggaagatacacaaaatcactcctac |
42694141 |
T |
|
| Q |
180 |
tctcacttttaggatctg |
197 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
42694142 |
tctcacttttaggatctg |
42694159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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