View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_high_89 (Length: 304)
Name: NF3820_high_89
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_89 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 43065392 - 43065115
Alignment:
| Q |
18 |
acgaaaatattttaaaggcgtaagtattgtaagatcctatattttaattaaatggttagaacctttagttttatttaatttaaaggattttaagtaatcc |
117 |
Q |
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| T |
43065392 |
acgaaactattttaaagggataagtattgtaagatcctatattttaattaaatggttagaacctttagttttatttaatttaaaggatttgaagtaatcc |
43065293 |
T |
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| Q |
118 |
atgtgtgaccatgtaaattaatttcatttttaattatgtgaaattaatatattttaatgtttaatagaagtaataaaaagtgaacgaaagttgagacatc |
217 |
Q |
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| T |
43065292 |
atgtg--accatgtaaattatttt-atttttaattatgtgaaattaatatattttaatgtttaatagaagtaataaaacgtgaacgaaagttgatacatc |
43065196 |
T |
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| Q |
218 |
gtattgttccatgtattccgacatgttaattctaactaaccgattttcatcgttaaaaagttgttccacaagagcctttgc |
298 |
Q |
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| T |
43065195 |
gtattgttccatgtattccgacatgttaattctcactaaccgattttcatcatcaaaaagttgttccacaagagcctttgc |
43065115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 221 - 298
Target Start/End: Original strand, 43064655 - 43064732
Alignment:
| Q |
221 |
ttgttccatgtattccgacatgttaattctaactaaccgattttcatcgttaaaaagttgttccacaagagcctttgc |
298 |
Q |
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| T |
43064655 |
ttgttccatgtattccgacatgtcaattctaactaaccgattttcatcatcaagaagttgttctgcaagagccattgc |
43064732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 298
Target Start/End: Complemental strand, 45468006 - 45467929
Alignment:
| Q |
221 |
ttgttccatgtattccgacatgttaattctaactaaccgattttcatcgttaaaaagttgttccacaagagcctttgc |
298 |
Q |
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| T |
45468006 |
ttgttccatgtattccgacatgtcaattctcaccaactgattttcatcatcaaatagctgctctgcaagagcctttgc |
45467929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 295
Target Start/End: Original strand, 42449881 - 42449955
Alignment:
| Q |
221 |
ttgttccatgtattccgacatgttaattctaactaaccgattttcatcgttaaaaagttgttccacaagagcctt |
295 |
Q |
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| T |
42449881 |
ttgttccatgtactccgacatgttcattctcaccaactgattttcatcatcaaatagttgctcagcaagagcctt |
42449955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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