View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3820_high_90 (Length: 302)
Name: NF3820_high_90
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_90 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 52 - 295
Target Start/End: Complemental strand, 25450871 - 25450628
Alignment:
| Q |
52 |
taacaaaggctaatatatttctgctgtattttacacacggctgtacaaggctttatagctgtccaagctttacaaggtaatcaaatgcatttacataata |
151 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25450871 |
taacaaaggctaatatatttctgctatattttacacacggctgtacaaggctttatagctgtccaagctttacaaggtaatcaaatgcatttacataata |
25450772 |
T |
|
| Q |
152 |
attaaatgcattgaattagaattacagtagagcaaaacaattgtacatgaataaggcaagtcaattgtactgactaatgacagttgatcctaaacaataa |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25450771 |
attaaatgcattgaattagaattacagtagagcaaaacaattgtacatgaataaggtaagtcaattgtactgactaatgacagttgatcctaaacaataa |
25450672 |
T |
|
| Q |
252 |
tagttatgcatgaattaagggaagtcaacaatgatgatgatgtc |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
25450671 |
tagttatgcatgaattaagggaagtcaacagtgatgatgatgtc |
25450628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 52 - 295
Target Start/End: Complemental strand, 25446308 - 25446065
Alignment:
| Q |
52 |
taacaaaggctaatatatttctgctgtattttacacacggctgtacaaggctttatagctgtccaagctttacaaggtaatcaaatgcatttacataata |
151 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25446308 |
taacaaaggctaatatatttctgctatattttacacacggttgtacaaggctttatagctgtccaagctttacaaggtaatcaaatgcatttacataata |
25446209 |
T |
|
| Q |
152 |
attaaatgcattgaattagaattacagtagagcaaaacaattgtacatgaataaggcaagtcaattgtactgactaatgacagttgatcctaaacaataa |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
25446208 |
attaaatgcattgaattagaattacagtagagcaaaacaattgtacatgaataaggtaagtcaattgtactgactaatgacaattgatcctaaacaataa |
25446109 |
T |
|
| Q |
252 |
tagttatgcatgaattaagggaagtcaacaatgatgatgatgtc |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
25446108 |
tagttatgcatgaattaagggaagtcaacagtgatgatgatgtc |
25446065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 45 - 295
Target Start/End: Original strand, 2606833 - 2607085
Alignment:
| Q |
45 |
tataaaataacaaaggctaatatatttctgctgtat--tttacacacggctgtacaaggctttatagctgtccaagctttacaaggtaatcaaatgcatt |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2606833 |
tataaaataacaaaggctaatatatttctgctatatattttacacatggctgtacaaggctttatagatgtccaagctttacaaggtaatcaaatgcatt |
2606932 |
T |
|
| Q |
143 |
tacataataattaaatgcattgaattagaattacagtagagcaaaacaattgtacatgaataaggcaagtcaattgtactgactaatgacagttgatcct |
242 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||| |
|
|
| T |
2606933 |
tacataataattaaatgcattgaattggaattacagtagagcaaaacaattgtacatgaataaggtaagtcaattgtactaactaatgacaattgatcct |
2607032 |
T |
|
| Q |
243 |
aaacaataatagttatgcatgaattaagggaagtcaacaatgatgatgatgtc |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2607033 |
aaacaataatagttatgcatgaattaagggaagtcaacaatgatgatgatgtc |
2607085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 31137790 - 31137831
Alignment:
| Q |
3 |
atcactaaagaatgtggtattgagctccaaattagcaaagtc |
44 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31137790 |
atcactaaagaatgtggtattgagctccaaattagcaaagtc |
31137831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 45 - 295
Target Start/End: Complemental strand, 31901621 - 31901369
Alignment:
| Q |
45 |
tataaaataacaaaggctaatatatttctgctgtat--tttacacacggctgtacaaggctttatagctgtccaagctttacaaggtaatcaaatgcatt |
142 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31901621 |
tataaaataacaaaggctaatatatttatgctatatcttttacacacggctgtacaaggctttatagctgtccaagctttacaaggtaatcaaatgcatt |
31901522 |
T |
|
| Q |
143 |
tacataataattaaatgcattgaattagaattacagtagagcaaaacaattgtacatgaataaggcaagtcaattgtactgactaatgacagttgatcct |
242 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||| | |
|
|
| T |
31901521 |
tacataataattaaatgcattgaatgggaattacagtagagcaaaacaattgtacatgaataaggtaagtcaactttactgactaatgacagttgatcat |
31901422 |
T |
|
| Q |
243 |
aaacaataatagttatgcatgaattaagggaagtcaacaatgatgatgatgtc |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31901421 |
aaacaataatagttatgcatgaattaagggaagtcaacaatgatgatgatgtc |
31901369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 47 - 292
Target Start/End: Complemental strand, 31925485 - 31925239
Alignment:
| Q |
47 |
taaaataacaaaggctaatatatttctgctgtat--tttacacacggctgtacaaggctttatagctgtccaagctttacaaggtaatcaaatgcattta |
144 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31925485 |
taaaataacaaaggctaatatatttatgctatatcttttacacacggttgtacaaggctttatagttgtccaagctttacaaggtaatcaaatgcattta |
31925386 |
T |
|
| Q |
145 |
cataataattaaatgcattgaattagaattacagtagagcaaaacaattgtacatgaataaggcaagtcaattgtactgactaatgacagttgatcctaa |
244 |
Q |
| |
|
|||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31925385 |
cataataattaaatttattga-ttggaattacagtagagcaaaacaattgtacatgaataaggtaagtcaactgtactgactaatgacagttgatcctaa |
31925287 |
T |
|
| Q |
245 |
acaataatagttatgcatgaattaagggaagtcaacaatgatgatgat |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31925286 |
acaataatagttatgcatgaattaagggaagtcaacaatgatgatgat |
31925239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University