View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3820_high_97 (Length: 286)

Name: NF3820_high_97
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3820_high_97
NF3820_high_97
[»] chr4 (1 HSPs)
chr4 (19-266)||(38489848-38490095)
[»] chr3 (3 HSPs)
chr3 (19-112)||(13464556-13464649)
chr3 (19-112)||(14349684-14349777)
chr3 (42-110)||(48446422-48446490)
[»] chr1 (1 HSPs)
chr1 (35-90)||(43099311-43099366)
[»] chr7 (1 HSPs)
chr7 (35-85)||(47367730-47367780)


Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 38490095 - 38489848
Alignment:
Q  19 aaaacatgagttcgattttgcagaatatattatgcaccattcaaaggtactagagaccatgaaaattcagagaaactgccttgaaaaggaccaagtgtta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38490095 aaaacatgagttcgattttgcagaatatattatgcaccattcaaaggtactagagaccatgaaaattcagagaaactgccttgaaaaggaccaagtgtta 38489996  T
Q  119 gtgaaattatattcatacataannnnnnnctctacatcgtgtaaaattttatttgattatattgataatgacatatacaccatgnnnnnnnaagaacctg 218  Q
    ||||||||||||||||||||||       ||||||| | ||||||||||||||||||||||||||||||||| |||||||||||       |||||||||    
T  38489995 gtgaaattatattcatacataagggggggctctacagcatgtaaaattttatttgattatattgataatgacgtatacaccatgtttttttaagaacctg 38489896  T
Q  219 tagtggttttttatgtatgaannnnnnngggcgttatattatataact 266  Q
    |||||||||||||||||||||       ||| ||||||||||||||||    
T  38489895 tagtggttttttatgtatgaatttttttgggagttatattatataact 38489848  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 13464649 - 13464556
Alignment:
Q  19 aaaacatgagttcgattttgcagaatatattatgcaccattcaaaggtactagagaccatgaaaattcagagaaactgccttgaaaaggaccaa 112  Q
    |||| ||||||| || |||||| ||||||||||||| |||||||| |||||||| ||||||| |||| |||| | ||||||||||||| |||||    
T  13464649 aaaatatgagtttgaatttgcaaaatatattatgcagcattcaaacgtactagaaaccatgacaattaagagtacctgccttgaaaagtaccaa 13464556  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 14349777 - 14349684
Alignment:
Q  19 aaaacatgagttcgattttgcagaatatattatgcaccattcaaaggtactagagaccatgaaaattcagagaaactgccttgaaaaggaccaa 112  Q
    |||| ||||||| || |||||| ||||||||||||| |||||||| |||||||| ||||||| |||| |||| | ||||||||||||| |||||    
T  14349777 aaaatatgagtttgaatttgcaaaatatattatgcagcattcaaaagtactagaaaccatgacaattaagagtacctgccttgaaaagtaccaa 14349684  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 48446422 - 48446490
Alignment:
Q  42 aatatattatgcaccattcaaaggtactagagaccatgaaaattcagagaaactgccttgaaaaggacc 110  Q
    ||||||||||||| |||||||| ||||| |||||||||| ||||||||| | |||||||||||| ||||    
T  48446422 aatatattatgcagcattcaaacgtactcgagaccatgacaattcagagtacctgccttgaaaatgacc 48446490  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 43099311 - 43099366
Alignment:
Q  35 tttgcagaatatattatgcaccattcaaaggtactagagaccatgaaaattcagag 90  Q
    |||||| ||||||||||||| |||||||| ||||||||||| ||||||||||||||    
T  43099311 tttgcaaaatatattatgcagcattcaaaagtactagagactatgaaaattcagag 43099366  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 47367780 - 47367730
Alignment:
Q  35 tttgcagaatatattatgcaccattcaaaggtactagagaccatgaaaatt 85  Q
    |||||| |||||||| |||| |||||||| |||||||||||||||| ||||    
T  47367780 tttgcaaaatatattgtgcaacattcaaaagtactagagaccatgacaatt 47367730  T

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