View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_103 (Length: 286)
Name: NF3820_low_103
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_103 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 38490095 - 38489848
Alignment:
| Q |
19 |
aaaacatgagttcgattttgcagaatatattatgcaccattcaaaggtactagagaccatgaaaattcagagaaactgccttgaaaaggaccaagtgtta |
118 |
Q |
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| T |
38490095 |
aaaacatgagttcgattttgcagaatatattatgcaccattcaaaggtactagagaccatgaaaattcagagaaactgccttgaaaaggaccaagtgtta |
38489996 |
T |
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| Q |
119 |
gtgaaattatattcatacataannnnnnnctctacatcgtgtaaaattttatttgattatattgataatgacatatacaccatgnnnnnnnaagaacctg |
218 |
Q |
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| T |
38489995 |
gtgaaattatattcatacataagggggggctctacagcatgtaaaattttatttgattatattgataatgacgtatacaccatgtttttttaagaacctg |
38489896 |
T |
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| Q |
219 |
tagtggttttttatgtatgaannnnnnngggcgttatattatataact |
266 |
Q |
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| T |
38489895 |
tagtggttttttatgtatgaatttttttgggagttatattatataact |
38489848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 13464649 - 13464556
Alignment:
| Q |
19 |
aaaacatgagttcgattttgcagaatatattatgcaccattcaaaggtactagagaccatgaaaattcagagaaactgccttgaaaaggaccaa |
112 |
Q |
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| T |
13464649 |
aaaatatgagtttgaatttgcaaaatatattatgcagcattcaaacgtactagaaaccatgacaattaagagtacctgccttgaaaagtaccaa |
13464556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 14349777 - 14349684
Alignment:
| Q |
19 |
aaaacatgagttcgattttgcagaatatattatgcaccattcaaaggtactagagaccatgaaaattcagagaaactgccttgaaaaggaccaa |
112 |
Q |
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| T |
14349777 |
aaaatatgagtttgaatttgcaaaatatattatgcagcattcaaaagtactagaaaccatgacaattaagagtacctgccttgaaaagtaccaa |
14349684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 48446422 - 48446490
Alignment:
| Q |
42 |
aatatattatgcaccattcaaaggtactagagaccatgaaaattcagagaaactgccttgaaaaggacc |
110 |
Q |
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| T |
48446422 |
aatatattatgcagcattcaaacgtactcgagaccatgacaattcagagtacctgccttgaaaatgacc |
48446490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 43099311 - 43099366
Alignment:
| Q |
35 |
tttgcagaatatattatgcaccattcaaaggtactagagaccatgaaaattcagag |
90 |
Q |
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|||||| ||||||||||||| |||||||| ||||||||||| |||||||||||||| |
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| T |
43099311 |
tttgcaaaatatattatgcagcattcaaaagtactagagactatgaaaattcagag |
43099366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 47367780 - 47367730
Alignment:
| Q |
35 |
tttgcagaatatattatgcaccattcaaaggtactagagaccatgaaaatt |
85 |
Q |
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|||||| |||||||| |||| |||||||| |||||||||||||||| |||| |
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| T |
47367780 |
tttgcaaaatatattgtgcaacattcaaaagtactagagaccatgacaatt |
47367730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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