View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_104 (Length: 282)
Name: NF3820_low_104
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_104 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 6 - 266
Target Start/End: Original strand, 17004329 - 17004589
Alignment:
| Q |
6 |
agtagtttgagaaaatagacgtgaatatgtaatgcgtcggtgctacacaacagataataatcacggagaattaccactatagtttgaaacaccaacagcc |
105 |
Q |
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| T |
17004329 |
agtagtttgagaaaatagacgtgaatatgtaatgtgtcggtgctacacaacagataataatcacagagagttaccactatagtttgaaacaccaacagcc |
17004428 |
T |
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| Q |
106 |
tttacaagtcctttttgaacagcatcacctagaccatcaatataccctgaaaagcaattcattggggaactagcattctcttaatatgattattatgaat |
205 |
Q |
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| T |
17004429 |
tttacaagtcctttttgaacagcatcacctagaccatcaatataccctgaaaagcaattcattggggaactagcattctcttaatatgattattatgaat |
17004528 |
T |
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| Q |
206 |
aagtttcgaaacatttagttccatttactatattaagtaaatagttcaattaactaaattg |
266 |
Q |
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| T |
17004529 |
aagtttcgaaacatttagttccatttactatattaagtaaatagttcaattaactaaattg |
17004589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 54 - 168
Target Start/End: Original strand, 17035512 - 17035626
Alignment:
| Q |
54 |
aacagataataatcacggagaattaccactatagtttgaaacaccaacagcctttacaagtcctttttgaacagcatcacctagaccatcaatataccct |
153 |
Q |
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|||| ||||| |||| |||| || ||||||||||||||||||| |||||||||||||||||| |||| ||| |||||||||||||||||||| || ||| |
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| T |
17035512 |
aacatataatgatcattgagagttgccactatagtttgaaacacaaacagcctttacaagtcccttttcaactgcatcacctagaccatcaatgtatcct |
17035611 |
T |
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| Q |
154 |
gaaaagcaattcatt |
168 |
Q |
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|||||| |||||||| |
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| T |
17035612 |
gaaaagtaattcatt |
17035626 |
T |
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