View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3820_low_106 (Length: 272)
Name: NF3820_low_106
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_106 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 7 - 213
Target Start/End: Original strand, 36542421 - 36542627
Alignment:
| Q |
7 |
atactgccatcaagttatatttcgcaacattttgtaacatgctttttgtatcttcgcatttt-ttcccatataatttccataaaaatgaaacccactaat |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36542421 |
atactgccatcaagttatatttcgcaacattttgtaacatgctttttgtatcttcgcatttttttcccatataatttccataaaaatgaaacccactaat |
36542520 |
T |
|
| Q |
106 |
aaatgtgtgcatgactcaagattcaaacttattttattttgtgcataacttccaacaacacataactcagacgtataatctacaacatttaattacacat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||| |
|
|
| T |
36542521 |
aaatgtgtgcatgactcaagattcaaacttattttattttgtgcataacttccaacaacacataactc-gacgtataatctaaaacattaaattacacat |
36542619 |
T |
|
| Q |
206 |
tatttgta |
213 |
Q |
| |
|
|||||||| |
|
|
| T |
36542620 |
tatttgta |
36542627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University