View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_108 (Length: 270)
Name: NF3820_low_108
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_108 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 31733514 - 31733672
Alignment:
| Q |
1 |
cgttgcatccacaacgtatcccaaatgtatcctaaaatcaannnnnnnnaaataattgaagaacatcatatacttttgagatacgtactgagagtatgct |
100 |
Q |
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| T |
31733514 |
cgttgcatccacaacgtatcccaaatgtatcctaaaatcatttttttttaaataattgaagaacatcatatacttttgagatacgtactgagagtatcct |
31733613 |
T |
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| Q |
101 |
aagaggctaagagtattggtgttagatatgtgtccaacaaggaaacttcgcccattttg |
159 |
Q |
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| T |
31733614 |
aagaggctaagagtattggtgttagatatgtgtccaacatggaaacttcgcccattttg |
31733672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 51 - 256
Target Start/End: Original strand, 31736237 - 31736433
Alignment:
| Q |
51 |
aataattgaagaacatcatatacttttgagatacgtactgagagtatgctaagaggctaagagtattggtgttagatatgtgtccaacaaggaaacttcg |
150 |
Q |
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| T |
31736237 |
aataactgaagaacatcatatacttttgagatacatactgagagtatcctaa--------gagtattgatgtttgatatgtgttcaacatggtaacgtcg |
31736328 |
T |
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| Q |
151 |
cccattttggagtatcctggcttcatagctagagtttgaaatannnnnnnnnnnnngttgttcatattataaatgtatgtttaacttggctttttcacat |
250 |
Q |
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| T |
31736329 |
cccattttggagtaccctggcttcatagctagagtttgaaata-tttttcatttttgtagttcatattataaatgtctgtttaacttggctttttcacat |
31736427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 107 - 262
Target Start/End: Original strand, 6498823 - 6498977
Alignment:
| Q |
107 |
ctaagagtattggtgttagatatgtgtccaacaaggaaacttcgcccattttggagtatcctggcttcatagctagagtttgaaatannnnnnnnnnnnn |
206 |
Q |
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| T |
6498823 |
ctaagagtattggtgttatatatgtgtccaacatggaaacttcgcccattttggagtatcctggcttcatagctagagtttgaaata-tttttcgttttt |
6498921 |
T |
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| Q |
207 |
gttgttcatattataaatgtatgtttaacttggctttttcacatctctctctgtgc |
262 |
Q |
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| T |
6498922 |
gttgttcatattataaatgtatgtttaacttggctttttcacatctctctctgtgc |
6498977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 6498505 - 6498618
Alignment:
| Q |
1 |
cgttgcatccacaacgtatcccaaatgtatcctaaaatcaannnnnnnnaaataattgaagaacatcatatacttttgagatacgtactgagagtatgct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
6498505 |
cgttgcatccacaacgtatcccaaatgtatcctaaaatcaattttttttaaataattgaagaacatcatatacttttgagatacgtactgagagtatcct |
6498604 |
T |
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| Q |
101 |
aagaggctaagagt |
114 |
Q |
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|||||||||||||| |
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| T |
6498605 |
aagaggctaagagt |
6498618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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