View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_11 (Length: 644)
Name: NF3820_low_11
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_11 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 626; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 3 - 644
Target Start/End: Complemental strand, 29868282 - 29867641
Alignment:
| Q |
3 |
atcatccaaggcataattgaacaacattttctactggacaaaatgaccaaaaaaggcagataatgagatgatggtatacctgaaccagaataaaaggtaa |
102 |
Q |
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| T |
29868282 |
atcatccaaggcataattgaacaacattttctactggacaaaatgaccaaaaaaggcagatactgagatgatggtatacctgaaccagaataaaaggtaa |
29868183 |
T |
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| Q |
103 |
agatacacctccactgggaggatttcctgagctatataattgttcatttcgttggataaggttctgaagacctacaaacttgtagcaataataaaagcag |
202 |
Q |
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| T |
29868182 |
agatacacctccactgggaggatttcctgagctatataattgttcatttcgttggataaggttctgaagacctacaaacttgtagcaataataaaagcag |
29868083 |
T |
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| Q |
203 |
ttagcaaacagaaactgaacaacacaaaaacagcgtggtttgatagaatctcttataatcaagtgcaaattttaaaaatagcaatccaggtccaggttag |
302 |
Q |
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| T |
29868082 |
ttagcaaacagaaactgaacaacacaaaaacagcgtggtttgatagaatctcttataatcaagtgcaaattttaaaaatagcaatccaggtccaggttag |
29867983 |
T |
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| Q |
303 |
cattccggtagtaaatcaattagagtgggctggacttacttgctgctcaagctcctgcagataggctgctttcctttcaattctactcctgagcccaaga |
402 |
Q |
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| T |
29867982 |
cattctggtagtaaatcaattagagtgggctggacttacttgctgctcaagctcctgcagataggctgctttcctttcaattctactcctgagcccaaga |
29867883 |
T |
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| Q |
403 |
cgctgtgtctatttaatcaaatttatatttttggattagatcagaacatcgctgaaggtaaagaataagccacgcatagagaaaagatacagttaaagaa |
502 |
Q |
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| T |
29867882 |
cgctgtgtctatttaatcaaatttatatttttggattagatcagaacattgctgaaggtaaagaataagccacgcatagagaaaagatacagctaaagaa |
29867783 |
T |
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| Q |
503 |
gaccaaacctttagttcttcaatatcactcagactggtacgaggaagacccttccattgtatttcttttttatccttggaaataatatccatagccataa |
602 |
Q |
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| T |
29867782 |
gaccaaacctttagttcttcaatatcactcagactggtacgaggaagacccttccattgtatttcttttttatccttggaaataatatccatagccataa |
29867683 |
T |
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| Q |
603 |
gaacattcagagcatcatagacccttcgacggatgtttttct |
644 |
Q |
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| T |
29867682 |
gaacattcagagcatcatagacccttcgacggatgtttttct |
29867641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 66 - 223
Target Start/End: Complemental strand, 29873182 - 29873025
Alignment:
| Q |
66 |
tgagatgatggtatacctgaaccagaataaaaggtaaagatacacctccactgggaggatttcctgagctatataattgttcatttcgttggataaggtt |
165 |
Q |
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|||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||| |
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| T |
29873182 |
tgagatgatggtttacctgtaccagaataaagggtaaagatacacctccactgggaggatttccagagctatataattgttcatttcgtttaacaaggtt |
29873083 |
T |
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| Q |
166 |
ctgaagacctacaaacttgtagcaataataaaagcagttagcaaacagaaactgaaca |
223 |
Q |
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| T |
29873082 |
ctgaagacctacaaacttgatgcaacaatgcaagtagttagcaaacagaaactgaaca |
29873025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 506 - 644
Target Start/End: Complemental strand, 29872738 - 29872600
Alignment:
| Q |
506 |
caaacctttagttcttcaatatcactcagactggtacgaggaagacccttccattgtatttcttttttatccttggaaataatatccatagccataagaa |
605 |
Q |
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||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||| |||| |
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| T |
29872738 |
caaacctttagctcttcaatatcattcagactagtacgaggaagacccttccattgaatttcctttttatccttagaaataatatccattgccatgagaa |
29872639 |
T |
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| Q |
606 |
cattcagagcatcatagacccttcgacggatgtttttct |
644 |
Q |
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| T |
29872638 |
cattcagagcatcatagacccttcgacgaatgtttttct |
29872600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 333 - 425
Target Start/End: Complemental strand, 29872939 - 29872847
Alignment:
| Q |
333 |
tggacttacttgctgctcaagctcctgcagataggctgctttcctttcaattctactcctgagcccaagacgctgtgtctatttaatcaaatt |
425 |
Q |
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|||||||||||| | ||| |||||||||| ||||| || |||||||||||||||| |||||||||||||||||| ||||| || ||||||||| |
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| T |
29872939 |
tggacttacttgttcctctagctcctgcaaataggatgatttcctttcaattctattcctgagcccaagacgctctgtctgttaaatcaaatt |
29872847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 4e-43; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 6 - 205
Target Start/End: Complemental strand, 44575953 - 44575757
Alignment:
| Q |
6 |
atccaaggcataattgaacaacattttctactggacaaaatgaccaaaaaaggcagataatgagatgatggtatacctgaaccagaataaaaggtaaaga |
105 |
Q |
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|||||||||| |||||||||||||||||| ||||| || | ||||||| ||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
44575953 |
atccaaggcaaaattgaacaacattttcttctggagaagtagc---aaaaaggtagataattagatgatggtgtacctgaaccagaataaaaggtaaaga |
44575857 |
T |
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| Q |
106 |
tacacctccactgggaggatttcctgagctatataattgttcatttcgttggataaggttctgaagacctacaaacttgtagcaataataaaagcagtta |
205 |
Q |
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|||||| | || |||||||||||||| ||||||||||| | ||||||||| |||||||||| |||||||||||||||| | ||||||| || |||||| |
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| T |
44575856 |
aacacctacgcttggaggatttcctgatctatataattgcttatttcgttgaataaggttcttaagacctacaaacttgatgtaataatacaaacagtta |
44575757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 543 - 633
Target Start/End: Complemental strand, 44575397 - 44575307
Alignment:
| Q |
543 |
gaggaagacccttccattgtatttcttttttatccttggaaataatatccatagccataagaacattcagagcatcatagacccttcgacg |
633 |
Q |
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| T |
44575397 |
gaggaagacccttccattgtatttcctttttatccttggaaataatatccattgccatgagaacattgagaacatcataggcccttcgacg |
44575307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 324 - 404
Target Start/End: Complemental strand, 44575631 - 44575551
Alignment:
| Q |
324 |
agagtgggctggacttacttgctgctcaagctcctgcagataggctgctttcctttcaattctactcctgagcccaagacg |
404 |
Q |
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| T |
44575631 |
agagtggaatggacttacttgttcctcaagctcctttagataggatgctttgctttcaattctattcctgatccctagacg |
44575551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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