View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3820_low_110 (Length: 269)

Name: NF3820_low_110
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3820_low_110
NF3820_low_110
[»] chr1 (5 HSPs)
chr1 (13-264)||(20628872-20629126)
chr1 (97-190)||(19637786-19637874)
chr1 (99-188)||(1486659-1486748)
chr1 (138-192)||(33202957-33203011)
chr1 (97-138)||(31667443-31667484)
[»] chr6 (2 HSPs)
chr6 (95-190)||(9024124-9024219)
chr6 (95-143)||(19369833-19369881)
[»] scaffold0002 (1 HSPs)
scaffold0002 (97-144)||(141977-142024)
[»] chr3 (3 HSPs)
chr3 (97-144)||(13164964-13165011)
chr3 (97-144)||(13290688-13290735)
chr3 (95-143)||(14774047-14774096)
[»] chr5 (2 HSPs)
chr5 (95-143)||(40211972-40212020)
chr5 (95-188)||(14873533-14873626)
[»] chr4 (2 HSPs)
chr4 (95-146)||(18513233-18513284)
chr4 (95-136)||(40224500-40224541)
[»] chr7 (1 HSPs)
chr7 (130-188)||(5409786-5409844)
[»] chr2 (1 HSPs)
chr2 (95-139)||(45000845-45000889)


Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 264
Target Start/End: Original strand, 20628872 - 20629126
Alignment:
Q  13 ataaaaacctctcttattaacactgtttataaatctattagaactaaaaaccactatttcataaagatgatggttgttgccatgagaaaatgacataatt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20628872 ataaaaacctctcttattaacactgtttataaatctattagaactaaaaaccactatttcataaagatgatggttgttgctatgagaaaatgacataatt 20628971  T
Q  113 aaaagtaatcatatgtatcggtgtcgtgtcggacgcgatac--atatccgtcaccgggaaacacctaatccgaggagtatataaacacgcctgtatatgt 210  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20628972 aaaagtaatcatatgtatcggtgtcgtgtcggacgcgatacatatatccgtcaccgggaaacacctaatccgaggagtatataaacacgcctgtatatgt 20629071  T
Q  211 atactaaaaacatctcttttaacagcaacaacaaaat-gaacacgcagaataatt 264  Q
    ||||||||||||||| ||||||||||||||||||||| |||||| ||||| ||||    
T  20629072 atactaaaaacatcttttttaacagcaacaacaaaatggaacactcagaaaaatt 20629126  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 190
Target Start/End: Original strand, 19637786 - 19637874
Alignment:
Q  97 agaaaatgacataattaaaagtaatcatatgtatcggtgtcgtgtcggacgcgatacatatccgtcaccgggaaacacctaatccgaggagtat 190  Q
    |||||||||||| ||| || |||||||||||| |||||||||     ||| ||||||||||||| ||||||||  | |||||||||||||||||    
T  19637786 agaaaatgacattattcaatgtaatcatatgtgtcggtgtcg-----gacacgatacatatccgacaccgggacgcccctaatccgaggagtat 19637874  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 188
Target Start/End: Complemental strand, 1486748 - 1486659
Alignment:
Q  99 aaaatgacataattaaaagtaatcatatgtatcggtgtcgtgtcggacgcgatacatatccgtcaccgggaaacacctaatccgaggagt 188  Q
    ||||| |||||||| |  ||||| ||| || ||||||||||||||||| ||| || | |||| |||||||| || |||||||||||||||    
T  1486748 aaaatcacataattcagtgtaattataagtgtcggtgtcgtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagt 1486659  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 33202957 - 33203011
Alignment:
Q  138 gtgtcggacgcgatacatatccgtcaccgggaaacacctaatccgaggagtatat 192  Q
    ||||| ||| ||||||||||||| ||||| || || |||||||||||||||||||    
T  33202957 gtgtcagacacgatacatatccgacaccgtgacacgcctaatccgaggagtatat 33203011  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 138
Target Start/End: Original strand, 31667443 - 31667484
Alignment:
Q  97 agaaaatgacataattaaaagtaatcatatgtatcggtgtcg 138  Q
    ||||||||||||||||||| ||||||| |||| |||||||||    
T  31667443 agaaaatgacataattaaatgtaatcacatgtgtcggtgtcg 31667484  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 190
Target Start/End: Complemental strand, 9024219 - 9024124
Alignment:
Q  95 tgagaaaatgacataattaaaagtaatcatatgtatcggtgtcgtgtcggacgcgatacatatccgtcaccgggaaacacctaatccgaggagtat 190  Q
    |||||||||||||||||| || |||||||||||| || |||||||||||||| ||  ||||||||  |||||||| || | |||||| ||| ||||    
T  9024219 tgagaaaatgacataattcaatgtaatcatatgtgtcagtgtcgtgtcggacacgggacatatccaacaccgggacacgcataatccaaggggtat 9024124  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 19369833 - 19369881
Alignment:
Q  95 tgagaaaatgacataattaaaagtaatcatatgtatcggtgtcgtgtcg 143  Q
    |||||||||||||||||| || ||||||| | || ||||||||||||||    
T  19369833 tgagaaaatgacataattcaatgtaatcacaagtgtcggtgtcgtgtcg 19369881  T

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Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 144
Target Start/End: Complemental strand, 142024 - 141977
Alignment:
Q  97 agaaaatgacataattaaaagtaatcatatgtatcggtgtcgtgtcgg 144  Q
    ||||||||||||||||||||||||||| |||| || ||||||||||||    
T  142024 agaaaatgacataattaaaagtaatcacatgtgtcagtgtcgtgtcgg 141977  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 13164964 - 13165011
Alignment:
Q  97 agaaaatgacataattaaaagtaatcatatgtatcggtgtcgtgtcgg 144  Q
    ||||||||||||||||||||||||||| |||| || ||||||||||||    
T  13164964 agaaaatgacataattaaaagtaatcacatgtgtcagtgtcgtgtcgg 13165011  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 13290688 - 13290735
Alignment:
Q  97 agaaaatgacataattaaaagtaatcatatgtatcggtgtcgtgtcgg 144  Q
    ||||||||||||||||||||||||||| |||| || ||||||||||||    
T  13290688 agaaaatgacataattaaaagtaatcacatgtgtcagtgtcgtgtcgg 13290735  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 14774047 - 14774096
Alignment:
Q  95 tgagaaaatgacataattaaaa-gtaatcatatgtatcggtgtcgtgtcg 143  Q
    ||||||||||||||||| |||| |||||||||||| ||| ||||||||||    
T  14774047 tgagaaaatgacataatcaaaatgtaatcatatgtgtcgttgtcgtgtcg 14774096  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 40211972 - 40212020
Alignment:
Q  95 tgagaaaatgacataattaaaagtaatcatatgtatcggtgtcgtgtcg 143  Q
    ||||||||| |||||||| ||  ||||||||||||||||||||||||||    
T  40211972 tgagaaaattacataattcaatataatcatatgtatcggtgtcgtgtcg 40212020  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 188
Target Start/End: Original strand, 14873533 - 14873626
Alignment:
Q  95 tgagaaaatgacataattaaaagtaatcatatgtatcggtgtcgtgtcggacgcgatacatatccgtcaccgggaaacacctaatccgaggagt 188  Q
    ||||||||  |||||||| |  ||||| |||||| |||||||| |||||||||| | || | |||  |||||||| || |||||||||||||||    
T  14873533 tgagaaaagcacataatttagtgtaattatatgtgtcggtgtcatgtcggacgcaacacgtgtccaacaccgggacacgcctaatccgaggagt 14873626  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 18513284 - 18513233
Alignment:
Q  95 tgagaaaatgacataattaaaagtaatcatatgtatcggtgtcgtgtcggac 146  Q
    |||||||||||||||||| || |||||||||||| || |||| |||||||||    
T  18513284 tgagaaaatgacataattcaatgtaatcatatgtgtcagtgttgtgtcggac 18513233  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 40224541 - 40224500
Alignment:
Q  95 tgagaaaatgacataattaaaagtaatcatatgtatcggtgt 136  Q
    |||||||||||||||||| || |||||||||||| |||||||    
T  40224541 tgagaaaatgacataatttaatgtaatcatatgtgtcggtgt 40224500  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 5409844 - 5409786
Alignment:
Q  130 tcggtgtcgtgtcggacgcgatacatatccgtcaccgggaaacacctaatccgaggagt 188  Q
    ||||||||||||||||| ||| || | |||| |||||||| || |||||||||||||||    
T  5409844 tcggtgtcgtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagt 5409786  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 45000889 - 45000845
Alignment:
Q  95 tgagaaaatgacataattaaaagtaatcatatgtatcggtgtcgt 139  Q
    ||||||||||||| |||| || |||||||||||| ||||||||||    
T  45000889 tgagaaaatgacacaattcaatgtaatcatatgtgtcggtgtcgt 45000845  T

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