View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_112 (Length: 264)
Name: NF3820_low_112
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_112 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 40841376 - 40841633
Alignment:
| Q |
19 |
acttttaggaaaaaggttaagtcctcttatgagagttgaagaaaggagaatgtcattgtttttgggatg-agttggagat--gagagtgaaggtgacatg |
115 |
Q |
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| T |
40841376 |
acttttaggaaaaaggttaagtcctcttatgagagttgaagaaaggagaatgtcattgtttttgggatgcagttgaagaaaggagaatgaaggtgaaatg |
40841475 |
T |
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| Q |
116 |
aagaagaggaagtgcaaaaacattgtaaaagacagacacattttgaggaaccttaaagatgatgccatgttgttttgtttttgttgaaa---------aa |
206 |
Q |
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| T |
40841476 |
aagaagaggaagtgcaaaaacattgtaaaagacagacacattttgaggaaccttaaagatgatgccatgttgttttgtttttgttgaaaaaatggaagaa |
40841575 |
T |
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| Q |
207 |
atggatgtgaatttatagtgcaagagatgtgaaatttatcctcttttatttaggttgc |
264 |
Q |
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| T |
40841576 |
atggatgtgaatttatagtgcaagagatgtgaaatttatcctcttttatttaggttgc |
40841633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 40845931 - 40846126
Alignment:
| Q |
19 |
acttttaggaaaaaggttaagtcctcttatgagagttgaagaaaggagaatgtcattgtttttgggatg-agttggagat--gagagtgaaggtgacatg |
115 |
Q |
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| T |
40845931 |
acttttaggaaaaaggttaagtcctcttatgagagttgaagaaaggagaatgtcattgtttttgggatgcagttgaagaaaggagagcgaaggtgaaatg |
40846030 |
T |
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| Q |
116 |
aagaagaggaagtgcaaaaacattgtaaaagacagacacattttgaggaaccttaaagatgatgccatgttgttttgtttttgttgaaaaaatgga |
211 |
Q |
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| T |
40846031 |
aagaagaggaagtgcaacaacattgtaaaagacagacacattttgaggaaccttaaagatgatgccatgttgttttgtttttgttgaaaaaatgga |
40846126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 52 - 209
Target Start/End: Original strand, 40852765 - 40852913
Alignment:
| Q |
52 |
agttgaagaaaggagaatgtcattgtttttgggatgagttggagatgagagtgaaggtgacatgaagaagaggaagtgcaaaaacattgtaaaagacaga |
151 |
Q |
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| T |
40852765 |
agttgaagaaaggagaatgtcattgtttgtgggataagctggagatgagtatgaatgtgaaatgaaga---ggaag------aacatcataaaagacaga |
40852855 |
T |
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| Q |
152 |
cacattttgaggaaccttaaagatgatgccatgttgttttgtttttgttgaaaaaatg |
209 |
Q |
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| T |
40852856 |
cacattttgaggaaccttaaagatgatgccatgttgccttgtttttgttgaaagaatg |
40852913 |
T |
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