View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_116 (Length: 260)
Name: NF3820_low_116
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_116 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 248
Target Start/End: Complemental strand, 51729389 - 51729154
Alignment:
| Q |
15 |
agaaatctcagttgaagaaaattgaatatgcacaaactaaagaaaaagagagaaagattaca--caatagtgtcaaaagtaatcaaagaagaattccaca |
112 |
Q |
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| T |
51729389 |
agaaatctcagttgaagaaaattgaatatccacaaactaaagaaaaagagagaaagattacagacaatagtgtcaaaagtaatcaaagaagaattccaca |
51729290 |
T |
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| Q |
113 |
tttccatacatagatatgaaacatactttggaagcacgnnnnnnntcctgatttacagcataactctcatttctttttcgacaactttgggcctcaagtt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51729289 |
tttccatacatagatatgaaacatactttggaagcacgaaaaaaatcctgatttacagcataactctcatttctttttcgacaactttgggcctcaagtt |
51729190 |
T |
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| Q |
213 |
tcaactttcaccacccagtgagcatacctaggttca |
248 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
51729189 |
tcaactttcaccacccagtgagcatacctaggttca |
51729154 |
T |
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