View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_117 (Length: 259)
Name: NF3820_low_117
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_117 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 10555771 - 10556001
Alignment:
| Q |
19 |
aaaggggcactgataatttggagtttggtcaggaggtaagtaaagtctggtcaaggattgttccagccaatgaccatgaaaccatggtcgtagtctttat |
118 |
Q |
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| T |
10555771 |
aaaggggcactgataatttggagtttggtcaggaggtaagtaaagtctggtcaaggattgttccagccaatgaccatgaaaccatggtcatagtctttat |
10555870 |
T |
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| Q |
119 |
gataaactattttttgattgtggcatctcattgttatgtttgatgtgtgtttgtagaatcatatatacaccttgaattttgaaccgtagtctcagtttca |
218 |
Q |
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| T |
10555871 |
gataaactattttttgattgtggcatctcattgttatgtttgatgtgtgtttgtagaatcatatatacaccttgaattttgaaccgtagtctcagtttca |
10555970 |
T |
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| Q |
219 |
tgcttatgttatccatttgtttcattttcat |
249 |
Q |
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| T |
10555971 |
tgcttatgttatccatttgtttcattttcat |
10556001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 11246949 - 11246898
Alignment:
| Q |
36 |
ttggagtttggtcaggaggtaagtaaagtctggtcaaggattgttccagcca |
87 |
Q |
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| T |
11246949 |
ttggagtttggtccgaaggtaaataaagtatggtcaaggattgttccagcca |
11246898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 84
Target Start/End: Complemental strand, 29844485 - 29844443
Alignment:
| Q |
42 |
tttggtcaggaggtaagtaaagtctggtcaaggattgttccag |
84 |
Q |
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| T |
29844485 |
tttgatcaggaggtaagtaaagtctggtcaagaaatgttccag |
29844443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 3567135 - 3567179
Alignment:
| Q |
39 |
gagtttggtcaggaggtaagtaaagtctggtcaaggattgttcca |
83 |
Q |
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||||| || ||||||||||||||||||||| |||| ||||||||| |
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| T |
3567135 |
gagttcggccaggaggtaagtaaagtctgggcaagaattgttcca |
3567179 |
T |
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