View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3820_low_118 (Length: 257)
Name: NF3820_low_118
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_118 |
 | |
|
| [»] scaffold0779 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 4368646 - 4368409
Alignment:
| Q |
18 |
agcttgggcattcctttttgaattttctctctaaccaagtggaagtctatctctaagtgctttgtcctttcataaaaaattggattaaaagctatgtgaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4368646 |
agcttgggcattcctttttgaattttctctctaaccaagtggaagtctatctctaagtgctttgtcctttcataaaaaattggattaaaagctatgtgaa |
4368547 |
T |
|
| Q |
118 |
ttgcactctggctgtcacagtacaagacatgttgtctggtgcatttgatgttaaaattctttagaagatatagtagcagtaaacaatgctctatactcat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4368546 |
ttgcactctggctgtcacagtacaagacatgttgtctggtgcatttgatgttaaaattctttagaagatatagtagcagtaaacaatgttctatactcat |
4368447 |
T |
|
| Q |
218 |
cctcttaagatgatcttgatattgtccgttgtttctta |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4368446 |
cctcttaagatgatcttgatattgtccgttgtttctta |
4368409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 15451029 - 15450965
Alignment:
| Q |
72 |
aagtgctttgtcctttcataaaaaattggattaaaagctatgtgaattgcactctggctgtcaca |
136 |
Q |
| |
|
|||||||| || ||||||| ||||| ||||||| ||||||||||| |||||| ||| ||||||| |
|
|
| T |
15451029 |
aagtgcttggttctttcatgaaaaactggattagcagctatgtgaagtgcactttggttgtcaca |
15450965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 151
Target Start/End: Original strand, 18497750 - 18497876
Alignment:
| Q |
25 |
gcattcctttttgaattttctctctaaccaagtggaagtctatctctaagtgctttgtcctttcataaaaaattggattaaaagctatgtgaattgcact |
124 |
Q |
| |
|
||||||| |||| |||||||||||||||||| ||| ||||||| || || |||||||| || |||| |||||||||||| |||| || ||||||||||| |
|
|
| T |
18497750 |
gcattccctttttaattttctctctaaccaaatggcagtctatttccaaatgctttgttctctcatgaaaaattggatttgaagcaatatgaattgcact |
18497849 |
T |
|
| Q |
125 |
ctggctgtcacagtacaagacatgttg |
151 |
Q |
| |
|
|| |||||||| ||||| ||| |||| |
|
|
| T |
18497850 |
ttgactgtcacaatacaaaacaggttg |
18497876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 151
Target Start/End: Original strand, 26359414 - 26359540
Alignment:
| Q |
25 |
gcattcctttttgaattttctctctaaccaagtggaagtctatctctaagtgctttgtcctttcataaaaaattggattaaaagctatgtgaattgcact |
124 |
Q |
| |
|
||||||| |||| |||||||||||||||||| ||| ||||||| ||||| |||| ||| || |||| ||||| |||||| |||| || ||||||||||| |
|
|
| T |
26359414 |
gcattccctttttaattttctctctaaccaaatggcagtctatttctaaatgctctgttctctcatgaaaaactggatttgaagcaatatgaattgcact |
26359513 |
T |
|
| Q |
125 |
ctggctgtcacagtacaagacatgttg |
151 |
Q |
| |
|
|| |||||||| ||||| ||| |||| |
|
|
| T |
26359514 |
ttgactgtcacaatacaaaacaggttg |
26359540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 151
Target Start/End: Original strand, 25573771 - 25573897
Alignment:
| Q |
25 |
gcattcctttttgaattttctctctaaccaagtggaagtctatctctaagtgctttgtcctttcataaaaaattggattaaaagctatgtgaattgcact |
124 |
Q |
| |
|
||||||| |||| |||||||||||||||||| ||| ||||||| || || |||||||| || |||| ||||| |||||| |||| || ||||||||||| |
|
|
| T |
25573771 |
gcattccctttttaattttctctctaaccaaatggcagtctatttccaaatgctttgttctctcatgaaaaactggatttgaagcaatatgaattgcact |
25573870 |
T |
|
| Q |
125 |
ctggctgtcacagtacaagacatgttg |
151 |
Q |
| |
|
|| |||||||| ||||| ||| |||| |
|
|
| T |
25573871 |
ttgactgtcacaatacaaaacaggttg |
25573897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 2998734 - 2998680
Alignment:
| Q |
106 |
aagctatgtgaattgcactctggctgtcacagtacaagacatgttgtctggtgca |
160 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| || ||| |||||||| |||| |
|
|
| T |
2998734 |
aagctatgtgaattgcactctgactatcacagtataacacaggttgtctgatgca |
2998680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0779 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0779
Description:
Target: scaffold0779; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 151
Target Start/End: Complemental strand, 6145 - 6019
Alignment:
| Q |
25 |
gcattcctttttgaattttctctctaaccaagtggaagtctatctctaagtgctttgtcctttcataaaaaattggattaaaagctatgtgaattgcact |
124 |
Q |
| |
|
||||||| |||| || ||||||||||||||| ||| ||||||| || | |||||||| || || | ||||| |||||| |||| || ||||||||||| |
|
|
| T |
6145 |
gcattccctttttaagtttctctctaaccaaatggcagtctatttccagatgctttgttctctcgtgaaaaactggatttgaagcaatatgaattgcact |
6046 |
T |
|
| Q |
125 |
ctggctgtcacagtacaagacatgttg |
151 |
Q |
| |
|
|| || ||||| ||||| ||| |||| |
|
|
| T |
6045 |
ttgactatcacaatacaaaacaggttg |
6019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 34826028 - 34825974
Alignment:
| Q |
106 |
aagctatgtgaattgcactctggctgtcacagtacaagacatgttgtctggtgca |
160 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| || ||| |||||||| |||| |
|
|
| T |
34826028 |
aagctatgtgaattgcactctgactatcacagtataacacaggttgtctgatgca |
34825974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 37194308 - 37194254
Alignment:
| Q |
106 |
aagctatgtgaattgcactctggctgtcacagtacaagacatgttgtctggtgca |
160 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| || ||| |||||||| |||| |
|
|
| T |
37194308 |
aagctatgtgaattgcactctgactatcacagtataacacaggttgtctgatgca |
37194254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University