View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_12 (Length: 635)
Name: NF3820_low_12
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 546; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 16 - 569
Target Start/End: Original strand, 3112006 - 3112559
Alignment:
| Q |
16 |
ctatgcggaaggaatggttaagttatcaacaccggtatcataggattgtatcgaagttgactcctccaacttctgaaagttggaacaaaggttgtgtgct |
115 |
Q |
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| T |
3112006 |
ctatgcggaaggaatggttaagttatcaacaccggtatcataggattgtatcgaagttgactcctccaacttctgaaagttggaacaaaggttgtgtgct |
3112105 |
T |
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| Q |
116 |
atatgctaaaaagggtacaggaaaggcttggatgcaaccattgctacatgtgaataagatgtttgtgtggccaaaccatgcaatacaaatttttgtctct |
215 |
Q |
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| T |
3112106 |
atatgctaaaaagggtacaggaaaggcttggatgcaaccattgctacatgtgaataagatgtttgtgtggccaaaccatgcaatacaaatttttgtctct |
3112205 |
T |
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| Q |
216 |
aacattgacaatccagctttggccactttttgtgaaccagttgagaaggccaattcaagccattcttttactgcaggacttgctcacagtgttggtctca |
315 |
Q |
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| T |
3112206 |
aacattgacaatccagctttggccactttttgtgaaccagttgagaaggccaattcaagccattcttttactgcaggacttgctcacagtgttggtctca |
3112305 |
T |
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| Q |
316 |
ggtacatttatcttttttcaatttcatttcgatatcaattactctctgcctctcccttttcacctcttgatctttgttgtttgatcattgatgttgaaaa |
415 |
Q |
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| T |
3112306 |
ggtacatttatcttttttcaatttcatttcgatatcaattactcactgcctctcccttttcacctcttgatctttgttgtttgatcattgatgttgaaaa |
3112405 |
T |
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| Q |
416 |
agagaaaacaagaggcatatggtgaaccatgtgtttcaactacccaacgtagattcttcatatagacttaaatttgtttgtgaaagtttactaaaaataa |
515 |
Q |
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| T |
3112406 |
agagaaaacaagaggcatatggtgaaccatgtgttccaactacccaacgtagattcttcatatagacttaaatttgtttgtgaaagtttactaaaaataa |
3112505 |
T |
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| Q |
516 |
ttacagggtattctactcgtagttacatgatattcttatttacacgatcatatt |
569 |
Q |
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| T |
3112506 |
ttacagggtattctactcgtagttacatgatattcttatttacacgatcatatt |
3112559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 587 - 620
Target Start/End: Original strand, 3112554 - 3112587
Alignment:
| Q |
587 |
catattagcacgggattattatgatgttcttgtt |
620 |
Q |
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| T |
3112554 |
catattagcacgggattattatgatgttcttgtt |
3112587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 51 - 324
Target Start/End: Complemental strand, 35893984 - 35893708
Alignment:
| Q |
51 |
tatcataggattgtatcgaagttgactcctccaacttctgaaagttggaacaaaggttgtgtgctatatgctaaaaagggtacaggaaaggcttggatgc |
150 |
Q |
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| T |
35893984 |
tatcataggatcatgtccaagttgattcctccaacatctgaaacttggaatagaggttgtgtaatttatgctaaaaaggatagtggcaaggcttggatcc |
35893885 |
T |
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| Q |
151 |
aacca---ttgctacatgtgaataagatgtttgtgtggccaaaccatgcaatacaaatttttgtctctaacattgacaatccagctttggccactttttg |
247 |
Q |
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| T |
35893884 |
aaccactcatccatcatgccaataagaagtttgtgtggccaaaccatgcaaaactagtttctttgtcttctgttgacaacctaggattggccactttgtg |
35893785 |
T |
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| Q |
248 |
tgaaccagttgagaaggccaattcaagccattcttttactgcaggacttgctcacagtgttggtctcaggtacattt |
324 |
Q |
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| T |
35893784 |
ccaaacagttgaggaggctaattcaagtcactcctttactgatggactggctcatagtgttggtttcaggtgcattt |
35893708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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