View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_120 (Length: 255)
Name: NF3820_low_120
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_120 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 27538387 - 27538625
Alignment:
| Q |
11 |
cagagaagtttatataatcattgcaactttccaagtttatattttggaaagtatattataaggactcaatattactccaacccaacacatacaaaaatat |
110 |
Q |
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| T |
27538387 |
cagagaagcttatataatcattgcaactttccaagtttatattttggaaagtatattataaggactcaata---ctccaacccaacacctacaaaaata- |
27538482 |
T |
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| Q |
111 |
cactaaaggaaaatgctaaaagccacaacaaaaaattttgttgaaattgcacgatccattcttccttgtaattaatcttgttagagagtatttctttggc |
210 |
Q |
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| T |
27538483 |
--ctaaaggaaaatgctaaaagctacaccaaaaaatttcgttgaaattgcacgatccattcttccttgtaattaatcttgttagagagtatttctttggc |
27538580 |
T |
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| Q |
211 |
atttggcacatgatcttataatgagttaagtttaaaacatggatt |
255 |
Q |
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| T |
27538581 |
atttggcacttgatcttataatgagttaagtttaaaacatggatt |
27538625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 118 - 251
Target Start/End: Complemental strand, 34541263 - 34541130
Alignment:
| Q |
118 |
ggaaaatgctaaaagccacaacaaaaaattttgttgaaattgcacgatccattcttccttgtaattaatcttgttagagagtatttctttggcatttggc |
217 |
Q |
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| T |
34541263 |
ggaaaatgctaaaagccacgacaaaaaattttgttgaaattgcacgaaccatttttccttataattaatcttgttagagagtatttctttggcatttggc |
34541164 |
T |
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| Q |
218 |
acatgatcttataatgagttaagtttaaaacatg |
251 |
Q |
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| T |
34541163 |
acttgatcttataatgagttaagtttaaaacatg |
34541130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 3641169 - 3641055
Alignment:
| Q |
119 |
gaaaatgctaaaagccacaacaaaaaattttgttgaaattgcacgatccattcttccttgtaattaatcttgttagagagtatttctttggcatttggca |
218 |
Q |
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| T |
3641169 |
gaaaatgccaaaagacatgacaaaaaatttctctgaaattgcacgaaccattcctctttgtaattaatcttgttagacggtaatgctttggcatttggca |
3641070 |
T |
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| Q |
219 |
catgatcttataatg |
233 |
Q |
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| T |
3641069 |
cttgatcttataatg |
3641055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 115 - 245
Target Start/End: Original strand, 20276633 - 20276763
Alignment:
| Q |
115 |
aaaggaaaatgctaaaagccacaacaaaaaattttgttgaaattgcacgatccattcttccttgtaattaatcttgttagagagtatttctttggcattt |
214 |
Q |
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| T |
20276633 |
aaaggaaaacgctaaaaggcacgacgaaagaattcgttgaaattgcacgaaccattcctctttgtaattaaccttgttagacagctatgctttggcattt |
20276732 |
T |
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| Q |
215 |
ggcacatgatcttataatgagttaagtttaa |
245 |
Q |
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| T |
20276733 |
ggcacttgattttatagggagttacgtttaa |
20276763 |
T |
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