View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3820_low_121 (Length: 255)

Name: NF3820_low_121
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3820_low_121
NF3820_low_121
[»] chr3 (1 HSPs)
chr3 (18-245)||(19665918-19666145)
[»] chr1 (10 HSPs)
chr1 (18-245)||(11546777-11547004)
chr1 (18-245)||(48618562-48618789)
chr1 (19-245)||(48652667-48652893)
chr1 (129-245)||(48666795-48666911)
chr1 (120-245)||(48661191-48661316)
chr1 (148-245)||(48656244-48656341)
chr1 (20-77)||(48628473-48628530)
chr1 (19-77)||(48666709-48666767)
chr1 (19-77)||(48661117-48661175)
chr1 (21-66)||(48584894-48584939)
[»] chr8 (2 HSPs)
chr8 (121-213)||(27227816-27227908)
chr8 (19-74)||(27223511-27223566)


Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 19666145 - 19665918
Alignment:
Q  18 cttcttgtggacaccaattcaccacttttcctctctcatttgtttcctctaagaacccatttggtagaacatgttcctttcgacccgattccttagaagg 117  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19666145 cttcttgtggactccaattcaccacttttcctctctcatttgtttcctctaagaactcatttggtagaacatgttcctttcgacccgattccttagaagg 19666046  T
Q  118 tggttttagtacccacaaaaatgaaacattagaatccaataacccatatgcaatttcattcacttgttcttgtggaaggtacacaatagtaccaaaagaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19666045 tggttttagtacccacaaaaatgaaacattagaatccaataacccatgtgcaatttcattcacttgttcttgtggaaggtacacaatagtaccaaaagaa 19665946  T
Q  218 atataaacaacagaatcatttgcctttg 245  Q
    ||||||||||||||||||||||||||||    
T  19665945 atataaacaacagaatcatttgcctttg 19665918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 144; Significance: 8e-76; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 11546777 - 11547004
Alignment:
Q  18 cttcttgtggacaccaattcaccacttttcctctctcatttgtttcctctaagaacccatttggtagaacatgttcctttcgacccgattccttagaagg 117  Q
    |||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||| | ||   |||||||| |||    
T  11546777 cttcttgtggactccatttcacaacttttcctctctcatttgtttcctctaagaacccatttggcaaaacatgttcttttagccctacttccttaggagg 11546876  T
Q  118 tggttttagtacccacaaaaatgaaacattagaatccaataacccatatgcaatttcattcacttgttcttgtggaaggtacacaatagtaccaaaagaa 217  Q
    |||||||||||||||||||||||| || | |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  11546877 tggttttagtacccacaaaaatgatacttgagaatctaataacccatatgctatttcattcacttgttcttgtggaaggtacacaatagtcccaaaagaa 11546976  T
Q  218 atataaacaacagaatcatttgcctttg 245  Q
    |||||||| |||||||| |||| |||||    
T  11546977 atataaaccacagaatcttttggctttg 11547004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 48618789 - 48618562
Alignment:
Q  18 cttcttgtggacaccaattcaccacttttcctctctcatttgtttcctctaagaacccatttggtagaacatgttcctttcgacccgattccttagaagg 117  Q
    |||||||||||| ||| ||||||||||||||||||||| || || ||||||||||||||| ||| | |  |||||| ||| | ||  ||||||  |||||    
T  48618789 cttcttgtggactccagttcaccacttttcctctctcacttattccctctaagaacccatctggcaaattatgttcttttagccctaattcctccgaagg 48618690  T
Q  118 tggttttagtacccacaaaaatgaaacattagaatccaataacccatatgcaatttcattcacttgttcttgtggaaggtacacaatagtaccaaaagaa 217  Q
    |||||||| |||||||||||| || || | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||    
T  48618689 tggttttaatacccacaaaaacgatacttgagaatccaataacccatatgcaatttcattcacttgttcttgtggaatgtacacaatagacccaaaagaa 48618590  T
Q  218 atataaacaacagaatcatttgcctttg 245  Q
    |||||||| |||||| | |||| |||||    
T  48618589 atataaaccacagaaccttttggctttg 48618562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 48652667 - 48652893
Alignment:
Q  19 ttcttgtggacaccaattcaccacttttcctctctcatttgtttcctctaagaacccatttggtagaacatgttcctttcgacccgattccttagaaggt 118  Q
    ||||||||||| ||| || || ||||||||||||||| ||||||||||||||||||||| ||| | |  ||||  || | | || | |||||||  ||||    
T  48652667 ttcttgtggactccattttacaacttttcctctctcacttgtttcctctaagaacccatctggcaaactatgtggctctagcccagcttccttaacaggt 48652766  T
Q  119 ggttttagtacccacaaaaatgaaacattagaatccaataacccatatgcaatttcattcacttgttcttgtggaaggtacacaatagtaccaaaagaaa 218  Q
    ||||||| |||||||||||| || || | ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  48652767 ggttttaatacccacaaaaacgatacttgagaatccaataacccatatgctatttcattcacttgttcttgaggaaggtacacaacagtaccaaaagaaa 48652866  T
Q  219 tataaacaacagaatcatttgcctttg 245  Q
    ||||||| |||||| | |||| |||||    
T  48652867 tataaaccacagaaccttttgtctttg 48652893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 129 - 245
Target Start/End: Original strand, 48666795 - 48666911
Alignment:
Q  129 cccacaaaaatgaaacattagaatccaataacccatatgcaatttcattcacttgttcttgtggaaggtacacaatagtaccaaaagaaatataaacaac 228  Q
    ||||||||||||  || | ||||||||||||||||||||| ||||||| |||| ||||||| ||||| ||||||| ||||||||||||||||||||| ||    
T  48666795 cccacaaaaatgtgacttgagaatccaataacccatatgctatttcatacactagttcttgaggaagatacacaacagtaccaaaagaaatataaaccac 48666894  T
Q  229 agaatcatttgcctttg 245  Q
    |||| | |||| |||||    
T  48666895 agaaccttttggctttg 48666911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 120 - 245
Target Start/End: Original strand, 48661191 - 48661316
Alignment:
Q  120 gttttagtacccacaaaaatgaaacattagaatccaataacccatatgcaatttcattcacttgttcttgtggaaggtacacaatagtaccaaaagaaat 219  Q
    |||||| |||||||||||| || || | ||||| ||||||||||||||||||||| || ||||||||||| | | | | ||||||||| |||||||||||    
T  48661191 gttttaatacccacaaaaacgagacttgagaattcaataacccatatgcaatttcgttaacttgttcttgagtatgattcacaatagtcccaaaagaaat 48661290  T
Q  220 ataaacaacagaatcatttgcctttg 245  Q
    |||||| |||||| | |||| |||||    
T  48661291 ataaactacagaaccttttggctttg 48661316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 245
Target Start/End: Original strand, 48656244 - 48656341
Alignment:
Q  148 agaatccaataacccatatgcaatttcattcacttgttcttgtggaaggtacacaatagtaccaaaagaaatataaacaacagaatcatttgcctttg 245  Q
    ||||| |||||||||||||||||||||||||||||||||| | ||||| | ||||||||| ||||| |||| |||||| |||||| | |||| |||||    
T  48656244 agaattcaataacccatatgcaatttcattcacttgttctggaggaagttgcacaatagtcccaaaggaaacataaaccacagaaccttttggctttg 48656341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 48628473 - 48628530
Alignment:
Q  20 tcttgtggacaccaattcaccacttttcctctctcatttgtttcctctaagaacccat 77  Q
    |||||||||| ||| |||||||||||||||| |||| |||||||||| ||||||||||    
T  48628473 tcttgtggactccacttcaccacttttcctcactcacttgtttcctccaagaacccat 48628530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 48666709 - 48666767
Alignment:
Q  19 ttcttgtggacaccaattcaccacttttcctctctcatttgtttcctctaagaacccat 77  Q
    ||||||||||| ||||||||| |||||||||||| || |||||||||| ||||| ||||    
T  48666709 ttcttgtggactccaattcactacttttcctctcccacttgtttcctccaagaatccat 48666767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 48661117 - 48661175
Alignment:
Q  19 ttcttgtggacaccaattcaccacttttcctctctcatttgtttcctctaagaacccat 77  Q
    ||||||||||| ||| ||||| |||||||||||| || |||||||||| ||||| ||||    
T  48661117 ttcttgtggactccatttcactacttttcctctcccacttgtttcctccaagaagccat 48661175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 48584894 - 48584939
Alignment:
Q  21 cttgtggacaccaattcaccacttttcctctctcatttgtttcctc 66  Q
    ||||||||| ||| | ||||||||| ||||||||||||||||||||    
T  48584894 cttgtggactccactccaccactttccctctctcatttgtttcctc 48584939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 213
Target Start/End: Original strand, 27227816 - 27227908
Alignment:
Q  121 ttttagtacccacaaaaatgaaacattagaatccaataacccatatgcaatttcattcacttgttcttgtggaaggtacacaatagtaccaaa 213  Q
    |||||||| ||||||||| || || | |||||||||||| ||||| ||||||||||||||||||||||| ||||||| ||||||||| |||||    
T  27227816 ttttagtatccacaaaaaggagacttgagaatccaataatccataggcaatttcattcacttgttcttgaggaaggtgcacaatagtcccaaa 27227908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 27223511 - 27223566
Alignment:
Q  19 ttcttgtggacaccaattcaccacttttcctctctcatttgtttcctctaagaacc 74  Q
    ||||||||||||||| |||||||||||||||||| || | |||||||| |||||||    
T  27223511 ttcttgtggacaccacttcaccacttttcctctcccactagtttcctcgaagaacc 27223566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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