View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_122 (Length: 254)
Name: NF3820_low_122
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_122 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 42467049 - 42467276
Alignment:
| Q |
20 |
ggttaaaggaagtagaacaggatggattagcatgagccacaattggggtgcttcttaccaagcatttgcaacacttagtggccaaactctttctttcaag |
119 |
Q |
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| T |
42467049 |
ggttaaaggaagtagaacaggatggattagcatgagccacaattggggtgcttcttaccaagcatttgcaacacttagtggccaaactctttctttcaag |
42467148 |
T |
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| Q |
120 |
attacttcttacacaaccaaagaaactataatagcttggaatgttgctccttccaactggggtgctggaataacctattccacacatgtcaattttcatt |
219 |
Q |
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| T |
42467149 |
attacttcttacacaaccaaagaaactataatagcttggaatgttgctccttccaactggggtgctggactaacctattccacacatgtcaattttcatt |
42467248 |
T |
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| Q |
220 |
gaagtatgttgccatctgtgctcctcct |
247 |
Q |
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|||||||||||||||| |||||| |||| |
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| T |
42467249 |
gaagtatgttgccatcagtgctcatcct |
42467276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 24 - 175
Target Start/End: Complemental strand, 3183662 - 3183511
Alignment:
| Q |
24 |
aaaggaagtagaacaggatggattagcatgagccacaattggggtgcttcttaccaagcatttgcaacacttagtggccaaactctttctttcaagatta |
123 |
Q |
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|||||||| |||||||||||||||| |||||||| || ||||||||||| |||||||||||||||||||| |||| ||| |||||||||||| | ||| |
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| T |
3183662 |
aaaggaagcagaacaggatggattaagatgagccataactggggtgcttcctaccaagcatttgcaacactaggtggtcaagctctttctttcaggctta |
3183563 |
T |
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| Q |
124 |
cttcttacacaaccaaagaaactataatagcttggaatgttgctccttccaa |
175 |
Q |
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|||| ||||| || || || ||||| || || |||||||||||||||||||| |
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| T |
3183562 |
cttcatacaccactaaggagactattattgcatggaatgttgctccttccaa |
3183511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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