View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_126 (Length: 251)
Name: NF3820_low_126
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_126 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 19643170 - 19642939
Alignment:
| Q |
20 |
gatccgacatcgtacctccatcttttgattcaacaacaaacgtagaatccaaagacgttttcatctcaaaagaccaaaacatatcagccagaatcttcat |
119 |
Q |
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| T |
19643170 |
gatccgacatcgtacctccatcttttgattcaacaacaaacgtagaatccaaagacgttttcatctcaaaagcccaaaacatatcagccagaatcttcat |
19643071 |
T |
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| Q |
120 |
tcccatacccaacaacgatgaatttccaaaccaaaaactccctctccttgtttacttccacggtggtggtttctgcgtagaaacacctttctccccaaca |
219 |
Q |
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| T |
19643070 |
tcccatacccaacaacgatgaatttccaaaccaaaaactccctctccttgtttacttccacggtggtggtttctgcgtagaaacacctttctcaccaaca |
19642971 |
T |
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| Q |
220 |
taccacaattacctcaataccgttgtttctca |
251 |
Q |
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| T |
19642970 |
taccacaattacctcaataccattgtttctca |
19642939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 33918693 - 33918477
Alignment:
| Q |
20 |
gatccgacatcgtacctccatcttttgattcaacaacaaacgtagaatccaaagacgttttcatctcaaaagaccaaaacatatcagccagaatcttcat |
119 |
Q |
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| T |
33918693 |
gatccgacatcgtacctccatcttttgatccaacaacaaacgtagaatccaaagacattctcatctcaaaagaccaaaacatatcagccagaatcttcat |
33918594 |
T |
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| Q |
120 |
tcccatacccaacaacgatgaatttccaaaccaaaaactccctctccttgtttacttccacggtggtggtttctgcgtagaaacacctttctccccaaca |
219 |
Q |
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| T |
33918593 |
tcccaaactcaacaacgatcaatttccaaaccaaaaactccctctccttgtttacttccatggtggtggtttctgcgtagaaacacctttctcaccacca |
33918494 |
T |
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| Q |
220 |
taccacaattacctcaa |
236 |
Q |
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| T |
33918493 |
taccacaatttcctcaa |
33918477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 212
Target Start/End: Complemental strand, 33897089 - 33897022
Alignment:
| Q |
145 |
ccaaaccaaaaactccctctccttgtttacttccacggtggtggtttctgcgtagaaacacctttctc |
212 |
Q |
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| T |
33897089 |
ccaatccaaaaactccctgtctttgtctacttccatggtggtggtttctgcattgaaacacctttctc |
33897022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 33901762 - 33901853
Alignment:
| Q |
145 |
ccaaaccaaaaactccctctccttgtttacttccacggtggtggtttctgcgtagaaacacctttctccccaacataccacaattacctcaa |
236 |
Q |
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|||| ||||||||||||||| ||||||||| |||| ||||||| ||||||| | ||||| ||||| || |||| ||||| || |||||||| |
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| T |
33901762 |
ccaacccaaaaactccctcttcttgtttacatccatggtggtgctttctgcattgaaactcctttttcaccaaactaccataactacctcaa |
33901853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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