View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3820_low_128 (Length: 250)

Name: NF3820_low_128
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3820_low_128
NF3820_low_128
[»] chr5 (4 HSPs)
chr5 (12-196)||(21259117-21259303)
chr5 (90-154)||(35875806-35875870)
chr5 (79-150)||(25493785-25493856)
chr5 (198-234)||(21259335-21259371)
[»] chr3 (2 HSPs)
chr3 (100-172)||(3169297-3169369)
chr3 (77-119)||(45853036-45853078)
[»] chr4 (4 HSPs)
chr4 (92-175)||(41485716-41485799)
chr4 (80-150)||(24060543-24060613)
chr4 (93-149)||(33883111-33883167)
chr4 (89-150)||(42108757-42108818)
[»] chr6 (2 HSPs)
chr6 (90-175)||(32871799-32871884)
chr6 (80-135)||(28867152-28867207)
[»] chr8 (3 HSPs)
chr8 (90-153)||(35393717-35393780)
chr8 (80-124)||(36947324-36947368)
chr8 (74-150)||(38585159-38585235)
[»] chr7 (4 HSPs)
chr7 (80-150)||(20125557-20125627)
chr7 (77-150)||(19511374-19511447)
chr7 (79-175)||(21882815-21882911)
chr7 (79-119)||(46297579-46297619)
[»] chr2 (5 HSPs)
chr2 (76-150)||(37899574-37899648)
chr2 (77-119)||(13716812-13716854)
chr2 (81-119)||(20142936-20142974)
chr2 (89-150)||(38320271-38320332)
chr2 (75-119)||(31645200-31645244)
[»] scaffold0018 (1 HSPs)
scaffold0018 (89-150)||(69996-70057)
[»] chr1 (5 HSPs)
chr1 (78-117)||(13085134-13085173)
chr1 (76-119)||(48852606-48852649)
chr1 (80-150)||(23906677-23906747)
chr1 (90-175)||(35413003-35413088)
chr1 (81-150)||(49313575-49313644)


Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 12 - 196
Target Start/End: Original strand, 21259117 - 21259303
Alignment:
Q  12 agagagagaagggtgatttttgctatttatctagataaatagaaaaatggcccctcttgtaataaaaaagagcatttttatttatctatagagtttttat 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||    
T  21259117 agagagagaagggtgatttttgctatttatctagataaatagaaaaatggtccctcttgtaataaaaaagagcatttatatttatctagagagtttttat 21259216  T
Q  112 caagaattgataatgaaaaggtttaagctaattaaatttcatgctagacggaaatcaagggagg--atgagtgtaattaagaaaagt 196  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||  ||| ||||||||||| |||||    
T  21259217 caagaattgataaagaaaaggtttaagctaattaaatttcatgctggacggaaatcaagggaggtaatgggtgtaattaaggaaagt 21259303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 154
Target Start/End: Complemental strand, 35875870 - 35875806
Alignment:
Q  90 tatttatctatagagtttttatcaagaattgataatgaaaaggtttaagctaattaaatttcatg 154  Q
    ||||||| || |||| ||||||||||||||||| | | |||||||||||| ||||||||||||||    
T  35875870 tatttatttagagagattttatcaagaattgatcaaggaaaggtttaagccaattaaatttcatg 35875806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 25493785 - 25493856
Alignment:
Q  79 aagagcatttttatttatctatagagtttttatcaagaattgataatgaaaaggtttaagctaattaaattt 150  Q
    |||||||||  |||||||||| |||||||||||||||||||||| | ||||| || | ||| ||||||||||    
T  25493785 aagagcattgctatttatctagagagtttttatcaagaattgatcaagaaaatgtctcagccaattaaattt 25493856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 21259335 - 21259371
Alignment:
Q  198 gtgaaaaatatattccctgtaattatcattttccaat 234  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  21259335 gtgaaaaatatcttccttgtaattatcattttccaat 21259371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 3169369 - 3169297
Alignment:
Q  100 tagagtttttatcaagaattgataatgaaaaggtttaagctaattaaatttcatgctagacggaaatcaaggg 172  Q
    ||||||||||||||||||||||| | |||||||||||||| ||||||||||||||   | |||||||||||||    
T  3169369 tagagtttttatcaagaattgatcaagaaaaggtttaagccaattaaatttcatgaaggccggaaatcaaggg 3169297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 45853078 - 45853036
Alignment:
Q  77 aaaagagcatttttatttatctatagagtttttatcaagaatt 119  Q
    ||||||||||| |||||||||||||||| ||||||||||||||    
T  45853078 aaaagagcattgttatttatctatagagattttatcaagaatt 45853036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 175
Target Start/End: Original strand, 41485716 - 41485799
Alignment:
Q  92 tttatctatagagtttttatcaagaattgataatgaaaaggtttaagctaattaaatttcatgctagacggaaatcaagggagg 175  Q
    |||||||| |||||||||||||||||||||| | |||||||||||||| ||||||||||  |||| |  |||||| ||||||||    
T  41485716 tttatctagagagtttttatcaagaattgatcaagaaaaggtttaagccaattaaattttctgctggcaggaaattaagggagg 41485799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 24060543 - 24060613
Alignment:
Q  80 agagcatttttatttatctatagagtttttatcaagaattgataatgaaaaggtttaagctaattaaattt 150  Q
    |||||||| ||||||||||| ||| |||||||||||||||||| | ||||| || ||||||||||||||||    
T  24060543 agagcattgttatttatctaaagaatttttatcaagaattgatcaagaaaatgtctaagctaattaaattt 24060613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 33883111 - 33883167
Alignment:
Q  93 ttatctatagagtttttatcaagaattgataatgaaaaggtttaagctaattaaatt 149  Q
    ||||||| | |||||||||||||||||||| | ||||| |||||||| |||||||||    
T  33883111 ttatctaaaaagtttttatcaagaattgatcaagaaaatgtttaagccaattaaatt 33883167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 150
Target Start/End: Complemental strand, 42108818 - 42108757
Alignment:
Q  89 ttatttatctatagagtttttatcaagaattgataatgaaaaggtttaagctaattaaattt 150  Q
    ||||||||||| | | |||||||||||||||||| | ||||| |||| ||| ||||||||||    
T  42108818 ttatttatctagaaattttttatcaagaattgatcaagaaaaagtttcagccaattaaattt 42108757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 175
Target Start/End: Complemental strand, 32871884 - 32871799
Alignment:
Q  90 tatttatctatagagtttttatcaagaattgataatgaaaaggtttaagctaattaaatttcatgctagacggaaatcaagggagg 175  Q
    |||||||||| ||||||||||||||||||| || | |||||||||| | | ||||||||||  |  | ||||||||||||||||||    
T  32871884 tatttatctagagagtttttatcaagaatttatcaagaaaaggtttcaaccaattaaatttgttatttgacggaaatcaagggagg 32871799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 28867152 - 28867207
Alignment:
Q  80 agagcatttttatttatctatagagtttttatcaagaattgataatgaaaaggttt 135  Q
    |||||||| ||||||||||| |||| ||||||||||||||||| | ||||| ||||    
T  28867152 agagcattgttatttatctaaagagattttatcaagaattgattaagaaaaagttt 28867207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 153
Target Start/End: Original strand, 35393717 - 35393780
Alignment:
Q  90 tatttatctatagagtttttatcaagaattgataatgaaaaggtttaagctaattaaatttcat 153  Q
    |||||||||| |||||||||||||||||||||| | ||||  |||||||| |||| ||||||||    
T  35393717 tatttatctagagagtttttatcaagaattgatcaagaaagagtttaagccaattgaatttcat 35393780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 36947368 - 36947324
Alignment:
Q  80 agagcatttttatttatctatagagtttttatcaagaattgataa 124  Q
    |||||||| ||||||||||| |||| |||||||||||||||||||    
T  36947368 agagcattgttatttatctagagagattttatcaagaattgataa 36947324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 38585235 - 38585159
Alignment:
Q  74 taaaaaagagcatttttatttatctatagagtttttatcaagaattgataatgaaaaggtttaagctaattaaattt 150  Q
    |||||||||| |||  ||||||| || ||||||||||||||||||| || | ||||| |||| |  |||||||||||    
T  38585235 taaaaaagagtattgatatttatttagagagtttttatcaagaatttatcaagaaaatgtttcaattaattaaattt 38585159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 20125557 - 20125627
Alignment:
Q  80 agagcatttttatttatctatagagtttttatcaagaattgataatgaaaaggtttaagctaattaaattt 150  Q
    ||||||||| |||||||||| |||| ||||||||||||||||| | ||||| || | ||| ||||||||||    
T  20125557 agagcatttctatttatctagagaggttttatcaagaattgatcaagaaaatgtgtcagccaattaaattt 20125627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 19511374 - 19511447
Alignment:
Q  77 aaaagagcatttttatttatctatagagtttttatcaagaattgataatgaaaaggtttaagctaattaaattt 150  Q
    ||||||| |||| |||||||||  |||| ||||||||||||||||| | ||||| |||| ||| ||||||||||    
T  19511374 aaaagaggatttatatttatctcgagagattttatcaagaattgattaagaaaaagttttagccaattaaattt 19511447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 175
Target Start/End: Complemental strand, 21882911 - 21882815
Alignment:
Q  79 aagagcatttttatttatctatagagtttttatcaagaattgataatgaaaaggtttaagctaattaaatttcatgctagacggaaatcaagggagg 175  Q
    |||||||||  |||||||||| |||| |||||| |||||||||| | |||||| | | ||| ||||||||||  |  | | ||||||||||||||||    
T  21882911 aagagcattgctatttatctagagagattttatgaagaattgattaagaaaagatctcagccaattaaatttgttatttgccggaaatcaagggagg 21882815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 46297579 - 46297619
Alignment:
Q  79 aagagcatttttatttatctatagagtttttatcaagaatt 119  Q
    |||||||||  |||||||||| |||||||||||||||||||    
T  46297579 aagagcattactatttatctagagagtttttatcaagaatt 46297619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 150
Target Start/End: Complemental strand, 37899648 - 37899574
Alignment:
Q  76 aaaaagagcatttttatttatctatagagtttttatcaagaattgataatgaaaaggtttaagctaattaaattt 150  Q
    ||||||||||||  |||||||||| |||||||||||||| |||| || | |||||||||| | | ||||||||||    
T  37899648 aaaaagagcattgctatttatctagagagtttttatcaaaaatttatcaagaaaaggtttcaaccaattaaattt 37899574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 13716854 - 13716812
Alignment:
Q  77 aaaagagcatttttatttatctatagagtttttatcaagaatt 119  Q
    |||||||||||  |||||||||| |||||||||||||||||||    
T  13716854 aaaagagcattgctatttatctagagagtttttatcaagaatt 13716812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 20142936 - 20142974
Alignment:
Q  81 gagcatttttatttatctatagagtttttatcaagaatt 119  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  20142936 gagcattgttatttatctagagagtttttatcaagaatt 20142974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 150
Target Start/End: Complemental strand, 38320332 - 38320271
Alignment:
Q  89 ttatttatctatagagtttttatcaagaattgataatgaaaaggtttaagctaattaaattt 150  Q
    ||||||||||| ||||||||||||||||||| || | |||||| ||| | | ||||||||||    
T  38320332 ttatttatctagagagtttttatcaagaatttatcaagaaaagttttcaaccaattaaattt 38320271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 31645244 - 31645200
Alignment:
Q  75 aaaaaagagcatttttatttatctatagagtttttatcaagaatt 119  Q
    |||||||| |||  ||||||||||| |||||||||||||||||||    
T  31645244 aaaaaagaacatagttatttatctagagagtttttatcaagaatt 31645200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 150
Target Start/End: Complemental strand, 70057 - 69996
Alignment:
Q  89 ttatttatctatagagtttttatcaagaattgataatgaaaaggtttaagctaattaaattt 150  Q
    ||||||||||| |||||||||||| | ||||||| | |||||||||| ||| ||||||||||    
T  70057 ttatttatctagagagtttttatctaaaattgatcaagaaaaggtttcagccaattaaattt 69996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 117
Target Start/End: Complemental strand, 13085173 - 13085134
Alignment:
Q  78 aaagagcatttttatttatctatagagtttttatcaagaa 117  Q
    |||||||||| ||||||||||| |||||||||||||||||    
T  13085173 aaagagcattgttatttatctagagagtttttatcaagaa 13085134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 48852606 - 48852649
Alignment:
Q  76 aaaaagagcatttttatttatctatagagtttttatcaagaatt 119  Q
    |||||||||||| ||||||||||| ||||||||||| |||||||    
T  48852606 aaaaagagcattgttatttatctagagagtttttattaagaatt 48852649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 23906747 - 23906677
Alignment:
Q  80 agagcatttttatttatctatagagtttttatcaagaattgataatgaaaaggtttaagctaattaaattt 150  Q
    ||||||||  |||||||||| | || ||||||||||||||||| | ||||| |||| ||| ||||||||||    
T  23906747 agagcattgctatttatctagaaaggttttatcaagaattgatcaagaaaaagtttcagccaattaaattt 23906677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 175
Target Start/End: Original strand, 35413003 - 35413088
Alignment:
Q  90 tatttatctatagagtttttatcaagaattgataatgaaaaggtttaagctaattaaatttcatgctagacggaaatcaagggagg 175  Q
    |||||||||| |||||||||||||| |||| || | |||||||| | | | ||||||||||  |  | ||||||||||||||||||    
T  35413003 tatttatctagagagtttttatcaataatttatcaagaaaaggtctcaaccaattaaatttgttatttgacggaaatcaagggagg 35413088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 150
Target Start/End: Original strand, 49313575 - 49313644
Alignment:
Q  81 gagcatttttatttatctatagagtttttatcaagaattgataatgaaaaggtttaagctaattaaattt 150  Q
    |||||||  |||||||| |||||||||||||||||||||||| | ||||| || | |  |||||||||||    
T  49313575 gagcattgctatttatccatagagtttttatcaagaattgatcaagaaaatgtctcaattaattaaattt 49313644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University