View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3820_low_129 (Length: 250)

Name: NF3820_low_129
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3820_low_129
NF3820_low_129
[»] chr2 (2 HSPs)
chr2 (1-232)||(4783460-4783684)
chr2 (56-128)||(26616002-26616076)
[»] chr1 (2 HSPs)
chr1 (56-128)||(15474646-15474718)
chr1 (81-129)||(11788176-11788225)
[»] chr3 (2 HSPs)
chr3 (71-128)||(1885127-1885184)
chr3 (71-128)||(30528337-30528394)
[»] chr8 (3 HSPs)
chr8 (56-128)||(12503301-12503373)
chr8 (101-129)||(24628218-24628246)
chr8 (84-128)||(34743184-34743228)
[»] scaffold0500 (1 HSPs)
scaffold0500 (64-130)||(1099-1165)
[»] scaffold0027 (1 HSPs)
scaffold0027 (55-127)||(38240-38312)
[»] chr5 (1 HSPs)
chr5 (81-128)||(12066838-12066886)
[»] scaffold0097 (1 HSPs)
scaffold0097 (87-128)||(48082-48123)
[»] chr4 (2 HSPs)
chr4 (64-129)||(48136379-48136444)
chr4 (98-130)||(26310424-26310456)
[»] chr7 (1 HSPs)
chr7 (56-128)||(12868418-12868490)


Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 4783460 - 4783684
Alignment:
Q  1 catggtcttttcatatatatctcactcttaactcaagctgaaagcaccatgtgtgttaagtcgcgcaagggtactttcaaccattcagttgggaggaagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||  ||||||||||||||||||||    
T  4783460 catggtcttttcatatatatctcactcttaactcaagctgaaagca-------tgttaagtcgcgcaagggtactttcgtccattcagttgggaggaagt 4783552  T
Q  101 gttttttgttgggagaaaagcatttttcaattataatgttttatgatatgaagatactagccaaatgttgccaaggtaagcataattccaatatggataa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4783553 gttttttgttgggagaaaagcatttttcaattataatgttttatgatatgaagatactagccaaatgttggcaaggtaagcataattccaatatggataa 4783652  T
Q  201 tacaaattttccaattgaagatatggtcgttg 232  Q
    |||||||||| |||||||||||||||||||||    
T  4783653 tacaaatttttcaattgaagatatggtcgttg 4783684  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 26616076 - 26616002
Alignment:
Q  56 ttaagtcgcgcaagggtactttcaaccattcagttgggaggaagtg--ttttttgttgggagaaaagcatttttc 128  Q
    ||||||| ||||||||||||||   |||||||||||||||| ||||  ||||||||||||| |||| ||||||||    
T  26616076 ttaagtcacgcaagggtacttttgtccattcagttgggagggagtgttttttttgttgggataaaatcatttttc 26616002  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 15474646 - 15474718
Alignment:
Q  56 ttaagtcgcgcaagggtactttcaaccattcagttgggaggaagtgttttttgttgggagaaaagcatttttc 128  Q
    ||||||||||||  |||||||||  ||||||| ||||||||||||||||||||||||||||| | ||||||||    
T  15474646 ttaagtcgcgcataggtactttcgtccattcaattgggaggaagtgttttttgttgggagaagaccatttttc 15474718  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 11788225 - 11788176
Alignment:
Q  81 ccattcagttgggaggaagtgttttttgttgggagaaa-agcatttttca 129  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11788225 ccattcagttgggaggaagtgttttttgttgggagaaagagcatttttca 11788176  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 1885184 - 1885127
Alignment:
Q  71 gtactttcaaccattcagttgggaggaagtgttttttgttgggagaaaagcatttttc 128  Q
    ||||||||  |||||||||||||||| ||||||||||| |||||||| ||||||||||    
T  1885184 gtactttcgcccattcagttgggagggagtgttttttgatgggagaagagcatttttc 1885127  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 30528394 - 30528337
Alignment:
Q  71 gtactttcaaccattcagttgggaggaagtgttttttgttgggagaaaagcatttttc 128  Q
    ||||||||| | |||||||||| ||  ||||||||||||||||||||||||| |||||    
T  30528394 gtactttcatcaattcagttggtagtgagtgttttttgttgggagaaaagcaattttc 30528337  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 12503373 - 12503301
Alignment:
Q  56 ttaagtcgcgcaagggtactttcaaccattcagttgggaggaagtgttttttgttgggagaaaagcatttttc 128  Q
    ||||||||||||  | |||||||  | |||||||||||||| |||||||||||||||||||| |||| |||||    
T  12503373 ttaagtcgcgcagagatactttcgtcgattcagttgggagggagtgttttttgttgggagaagagcaattttc 12503301  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 129
Target Start/End: Complemental strand, 24628246 - 24628218
Alignment:
Q  101 gttttttgttgggagaaaagcatttttca 129  Q
    |||||||||||||||||||||||||||||    
T  24628246 gttttttgttgggagaaaagcatttttca 24628218  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 34743228 - 34743184
Alignment:
Q  84 ttcagttgggaggaagtgttttttgttgggagaaaagcatttttc 128  Q
    ||||||||||||| ||  |||||||||||||||| ||||||||||    
T  34743228 ttcagttgggagggagcattttttgttgggagaagagcatttttc 34743184  T

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Target: scaffold0500 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 1165 - 1099
Alignment:
Q  64 cgcaagggtactttcaaccattcagttgggaggaagtgttttttgttgggagaaaagcatttttcaa 130  Q
    ||||||||||||||||  ||| ||||||||||  |||| |||||| |||||||| ||||||||||||    
T  1165 cgcaagggtactttcattcatccagttgggagagagtgatttttgatgggagaagagcatttttcaa 1099  T

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Target: scaffold0027 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 127
Target Start/End: Original strand, 38240 - 38312
Alignment:
Q  55 gttaagtcgcgcaagggtactttcaaccattcagttgggaggaagtgttttttgttgggagaaaagcattttt 127  Q
    ||||||||||||| |||||||| |  ||||||| ||| ||||  ||||||||||||||||||| | |||||||    
T  38240 gttaagtcgcgcatgggtacttccgtccattcaattgagagggggtgttttttgttgggagaagaacattttt 38312  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 128
Target Start/End: Complemental strand, 12066886 - 12066838
Alignment:
Q  81 ccattcagttgggaggaagtgtttttt-gttgggagaaaagcatttttc 128  Q
    |||||||||||||||| |||||||||| |||||||||| ||||||||||    
T  12066886 ccattcagttgggagggagtgtttttttgttgggagaagagcatttttc 12066838  T

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Target: scaffold0097 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 48082 - 48123
Alignment:
Q  87 agttgggaggaagtgttttttgttgggagaaaagcatttttc 128  Q
    |||||||| |||||||||||||||||||||| |||| |||||    
T  48082 agttgggatgaagtgttttttgttgggagaatagcaattttc 48123  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 48136379 - 48136444
Alignment:
Q  64 cgcaagggtactttcaaccattcagttgggaggaagtgttttttgttgggagaaaagcatttttca 129  Q
    |||||||||||||||| ||||| |||||   || ||| |||||||||||||||| ||| |||||||    
T  48136379 cgcaagggtactttcatccatttagttgactgggagtattttttgttgggagaagagcctttttca 48136444  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 130
Target Start/End: Original strand, 26310424 - 26310456
Alignment:
Q  98 agtgttttttgttgggagaaaagcatttttcaa 130  Q
    ||||||||||||||||||||||||| |||||||    
T  26310424 agtgttttttgttgggagaaaagcaattttcaa 26310456  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 12868490 - 12868418
Alignment:
Q  56 ttaagtcgcgcaagggtactttcaaccattcagttgggaggaagtgttttttgttgggagaaaagcatttttc 128  Q
    ||||||| |||||||| ||||||| |||| || |||| ||  ||||||||||| |||||||| |||| |||||    
T  12868490 ttaagtcacgcaagggcactttcatccatgcacttggtagtgagtgttttttgatgggagaagagcaattttc 12868418  T

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