View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_130 (Length: 250)
Name: NF3820_low_130
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_130 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 74 - 250
Target Start/End: Original strand, 3567340 - 3567519
Alignment:
| Q |
74 |
cactaggccaacctttggaggttacttagttgcataattattctcacatttgcataaacaagcgtgttccaaaagagtgacaaagtaagttttgagtgtt |
173 |
Q |
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| T |
3567340 |
cactaggccaacctttgggggttacttagttgcataattattctcacatttgcataaacaagcgtgttccaaaagagtgacagagtaagttttgagtgtt |
3567439 |
T |
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| Q |
174 |
attaaaaagatcaattgcatcatctaattaa---tattatataagttatttttaactttgcatttatgataatgagaatt |
250 |
Q |
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|||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3567440 |
attaaaaaaatcaattgcatcatctaattaacatttttatataagttatttttaactttgcatttatgataatgagaatt |
3567519 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 33177651 - 33177684
Alignment:
| Q |
216 |
ttatttttaactttgcatttatgataatgagaat |
249 |
Q |
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| T |
33177651 |
ttatttttaactttgcatttatgataataagaat |
33177684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 245
Target Start/End: Original strand, 35689969 - 35689998
Alignment:
| Q |
216 |
ttatttttaactttgcatttatgataatga |
245 |
Q |
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| T |
35689969 |
ttatttttaactttgcatttatgataatga |
35689998 |
T |
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