View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_131 (Length: 250)
Name: NF3820_low_131
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_131 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 18513533 - 18513770
Alignment:
| Q |
1 |
tgttaccctatttcgatttttgatgattgagaacttctaatcagcaaataagatcaagatttgtaaatagaaggaatgaaaagagatgaaatttcaccaa |
100 |
Q |
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| T |
18513533 |
tgttaccctatttcgatttttgatgattgagaacttctaatcagcaaataagatcaagatttgtaaatagaaggaatgaaaagagatgaaatttcaccaa |
18513632 |
T |
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| Q |
101 |
cgtaagacatgttctcatatgcgagcgnnnnnnnctagagaaattttctgatgtaagcaacatttagtgttaataacgcttcagcaaacaccacttagca |
200 |
Q |
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| T |
18513633 |
cgtaagacatgttctcatatgcgagcgaaaaaaactagagaaattttctgatgtaagcaacatttagtgttaataacgcttcagcaaacacgacttagca |
18513732 |
T |
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| Q |
201 |
acattttagcacctaaactatttgcactttacaacctt |
238 |
Q |
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| T |
18513733 |
acattttagcacctaaactatttgcactttacaacctt |
18513770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 14515821 - 14515881
Alignment:
| Q |
178 |
gcttcagcaaacaccacttagcaacattttagcacctaaactatttgcactttacaacctt |
238 |
Q |
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| T |
14515821 |
gctttagcaagcaccacttagcagcattttagcacctaaactatttgcagtctacaacctt |
14515881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 14516107 - 14515997
Alignment:
| Q |
1 |
tgttaccctatttcgatttttgatgattgagaacttctaatcag---caaataagatcaagatttgtaaatagaaggaatgaaaagagatgaaatttcac |
97 |
Q |
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| T |
14516107 |
tgttaccatattttgattttagagagttgagaacttctaaacagtagcaaataagattaagttttgtaaatagaaggaatgaa-----atgaaatttcac |
14516013 |
T |
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| Q |
98 |
caacgtaagacatgtt |
113 |
Q |
| |
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|||||| |||| |||| |
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| T |
14516012 |
caacgtgagacgtgtt |
14515997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 13112031 - 13111990
Alignment:
| Q |
177 |
cgcttcagcaaacaccacttagcaacattttagcacctaaac |
218 |
Q |
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| T |
13112031 |
cgcttcagcaagcaccacttagcagcattttagcacctaaac |
13111990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 13112175 - 13112095
Alignment:
| Q |
3 |
ttaccctatttcgatttttgatgattgagaacttctaat---cagcaaataagatcaagatttgtaaatagaaggaatgaa |
80 |
Q |
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||||||||||| |||||| || |||||||||||||||| |||||| ||||||||| || ||||||||||||||||| |
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| T |
13112175 |
ttaccctattttgattttagagaattgagaacttctaattagtagcaaagaagatcaagtattataaatagaaggaatgaa |
13112095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 18673107 - 18673071
Alignment:
| Q |
8 |
ctatttcgatttttgatgattgagaacttctaatcag |
44 |
Q |
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| T |
18673107 |
ctatttcgatttttgataattgagaacttctaatcag |
18673071 |
T |
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