View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_134 (Length: 250)
Name: NF3820_low_134
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_134 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 697822 - 697588
Alignment:
| Q |
1 |
tttcactttccctggtttggtaacacatcataaactattagaaaaatgtttaaacatccatacgcccacattaaacacattgcgaaaaagaaagagaaag |
100 |
Q |
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| T |
697822 |
tttcactttccctggtttggtaacacatcataaactattagaaaa-tgtttaaacatccatacgcccacattaaacacattgcgaaaaagaaagagaaag |
697724 |
T |
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| Q |
101 |
tgatgagatatatttgattggttagtttgatgatgtgattggaagagagatataaagagaaaatgaaatgttgaagaattaggggtgcccgtacatcgtt |
200 |
Q |
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| T |
697723 |
tgatgagatatatttgattggttagtttgatgatgtgattggaagagagatataaagagaaaatgaaatgttgaagaattaggggtgcccgtacatcgtt |
697624 |
T |
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| Q |
201 |
aaaactattctctatttcaaatgcttatattgtgtt |
236 |
Q |
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| T |
697623 |
aaaactattctctctttcaaatgcttatattgtgtt |
697588 |
T |
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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 10515809 - 10515857
Alignment:
| Q |
127 |
ttgatgatgtgattggaagagagatataaagagaaaatgaaatgttgaa |
175 |
Q |
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| T |
10515809 |
ttgatgatgtgataggaagagatagataaagagaaaatgaaatgttgaa |
10515857 |
T |
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