View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_135 (Length: 249)
Name: NF3820_low_135
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_135 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 31119157 - 31119372
Alignment:
| Q |
20 |
gtcgggcatctggacatgcctttgagcaaaagtgcctgtgcaacagaagtttataaagatacacaatgttcgtttatgcagtaagacaattagtggttta |
119 |
Q |
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| T |
31119157 |
gtcgggcatctggacatgcctttgagcaaaagtgcctgtgcaacagaagtttataaagatacacaatgttcgtttatgcagtaagacaaatagtggttta |
31119256 |
T |
|
| Q |
120 |
ttcaaattcctctgcgcaactgcgctatagttgctatatgataatattctgtattagtggtgtccaagtgtcctatattttttacattagcggtgtttca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31119257 |
ttcaaattcctctgcgcaactgcgctatagttgctatatgataatattctgtattagtggtgtccaagtgtcctatattttttacattagcggtgtttca |
31119356 |
T |
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| Q |
220 |
gtgttgtgtcacaggt |
235 |
Q |
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|||||||||||||||| |
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| T |
31119357 |
gtgttgtgtcacaggt |
31119372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 215
Target Start/End: Original strand, 11815718 - 11815747
Alignment:
| Q |
186 |
agtgtcctatattttttacattagcggtgt |
215 |
Q |
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| T |
11815718 |
agtgtcctatattttttacattagcggtgt |
11815747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 215
Target Start/End: Complemental strand, 19294331 - 19294303
Alignment:
| Q |
187 |
gtgtcctatattttttacattagcggtgt |
215 |
Q |
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| T |
19294331 |
gtgtcctatattttttacattagcggtgt |
19294303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 215
Target Start/End: Complemental strand, 34013483 - 34013455
Alignment:
| Q |
187 |
gtgtcctatattttttacattagcggtgt |
215 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
34013483 |
gtgtcctatattttttacattagcggtgt |
34013455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 215
Target Start/End: Complemental strand, 55680683 - 55680655
Alignment:
| Q |
187 |
gtgtcctatattttttacattagcggtgt |
215 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
55680683 |
gtgtcctatattttttacattagcggtgt |
55680655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 215
Target Start/End: Original strand, 4748275 - 4748303
Alignment:
| Q |
187 |
gtgtcctatattttttacattagcggtgt |
215 |
Q |
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|
||||||||||||||||||||||||||||| |
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|
| T |
4748275 |
gtgtcctatattttttacattagcggtgt |
4748303 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 215
Target Start/End: Complemental strand, 9929577 - 9929549
Alignment:
| Q |
187 |
gtgtcctatattttttacattagcggtgt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
9929577 |
gtgtcctatattttttacattagcggtgt |
9929549 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 215
Target Start/End: Complemental strand, 26576013 - 26575985
Alignment:
| Q |
187 |
gtgtcctatattttttacattagcggtgt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
26576013 |
gtgtcctatattttttacattagcggtgt |
26575985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 215
Target Start/End: Original strand, 32201039 - 32201067
Alignment:
| Q |
187 |
gtgtcctatattttttacattagcggtgt |
215 |
Q |
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|
||||||||||||||||||||||||||||| |
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| T |
32201039 |
gtgtcctatattttttacattagcggtgt |
32201067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 215
Target Start/End: Complemental strand, 41848965 - 41848937
Alignment:
| Q |
187 |
gtgtcctatattttttacattagcggtgt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
41848965 |
gtgtcctatattttttacattagcggtgt |
41848937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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