View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3820_low_137 (Length: 249)

Name: NF3820_low_137
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3820_low_137
NF3820_low_137
[»] chr5 (3 HSPs)
chr5 (185-223)||(22009616-22009654)
chr5 (187-223)||(7473577-7473613)
chr5 (190-223)||(9043802-9043835)
[»] chr6 (1 HSPs)
chr6 (185-221)||(10092507-10092543)
[»] scaffold0596 (1 HSPs)
scaffold0596 (184-223)||(648-687)
[»] chr8 (5 HSPs)
chr8 (185-216)||(5657766-5657797)
chr8 (188-223)||(14678109-14678144)
chr8 (188-223)||(31100960-31100995)
chr8 (190-223)||(23738657-23738690)
chr8 (190-223)||(27541646-27541679)
[»] chr2 (2 HSPs)
chr2 (188-223)||(10328980-10329015)
chr2 (190-223)||(23349068-23349101)
[»] scaffold0045 (1 HSPs)
scaffold0045 (189-223)||(11722-11756)
[»] chr7 (4 HSPs)
chr7 (189-223)||(43071470-43071504)
chr7 (190-223)||(1262088-1262121)
chr7 (190-223)||(26910069-26910102)
chr7 (190-223)||(48849895-48849928)
[»] chr3 (2 HSPs)
chr3 (189-223)||(53973374-53973408)
chr3 (190-223)||(37982349-37982382)
[»] chr1 (1 HSPs)
chr1 (185-223)||(50990902-50990940)
[»] scaffold0157 (1 HSPs)
scaffold0157 (190-223)||(14008-14041)
[»] scaffold0096 (1 HSPs)
scaffold0096 (190-223)||(27410-27443)
[»] scaffold0035 (1 HSPs)
scaffold0035 (190-223)||(35063-35096)
[»] chr4 (2 HSPs)
chr4 (190-223)||(12506436-12506469)
chr4 (190-223)||(29863449-29863482)


Alignment Details
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 223
Target Start/End: Complemental strand, 22009654 - 22009616
Alignment:
Q  185 atcatatcatacttatatctaatctttgttaatattgct 223  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  22009654 atcatatcatacttatatctaatctttgttaacattgct 22009616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 7473613 - 7473577
Alignment:
Q  187 catatcatacttatatctaatctttgttaatattgct 223  Q
    |||||||||||||||||||||||||||||| ||||||    
T  7473613 catatcatacttatatctaatctttgttaacattgct 7473577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 9043802 - 9043835
Alignment:
Q  190 atcatacttatatctaatctttgttaatattgct 223  Q
    ||||||||||||||||||||||||||| ||||||    
T  9043802 atcatacttatatctaatctttgttaacattgct 9043835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 10092507 - 10092543
Alignment:
Q  185 atcatatcatacttatatctaatctttgttaatattg 221  Q
    |||||||||||||||||||||||||||||||| ||||    
T  10092507 atcatatcatacttatatctaatctttgttaacattg 10092543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 648 - 687
Alignment:
Q  184 catcatatcatacttatatctaatctttgttaatattgct 223  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  648 catcatatcatacttatatctgatctttgttaacattgct 687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 216
Target Start/End: Original strand, 5657766 - 5657797
Alignment:
Q  185 atcatatcatacttatatctaatctttgttaa 216  Q
    ||||||||||||||||||||||||||||||||    
T  5657766 atcatatcatacttatatctaatctttgttaa 5657797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 223
Target Start/End: Complemental strand, 14678144 - 14678109
Alignment:
Q  188 atatcatacttatatctaatctttgttaatattgct 223  Q
    ||||||||||||||||||||||||||||| ||||||    
T  14678144 atatcatacttatatctaatctttgttaacattgct 14678109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 223
Target Start/End: Complemental strand, 31100995 - 31100960
Alignment:
Q  188 atatcatacttatatctaatctttgttaatattgct 223  Q
    ||||||||||||||||||||||||||||| ||||||    
T  31100995 atatcatacttatatctaatctttgttaacattgct 31100960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 23738657 - 23738690
Alignment:
Q  190 atcatacttatatctaatctttgttaatattgct 223  Q
    ||||||||||||||||||||||||||| ||||||    
T  23738657 atcatacttatatctaatctttgttaacattgct 23738690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 27541679 - 27541646
Alignment:
Q  190 atcatacttatatctaatctttgttaatattgct 223  Q
    ||||||||||||||||||||||||||| ||||||    
T  27541679 atcatacttatatctaatctttgttaacattgct 27541646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 223
Target Start/End: Complemental strand, 10329015 - 10328980
Alignment:
Q  188 atatcatacttatatctaatctttgttaatattgct 223  Q
    ||||||||||||||||||||||||||||| ||||||    
T  10329015 atatcatacttatatctaatctttgttaacattgct 10328980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 23349101 - 23349068
Alignment:
Q  190 atcatacttatatctaatctttgttaatattgct 223  Q
    ||||||||||||||||||||||||||| ||||||    
T  23349101 atcatacttatatctaatctttgttaacattgct 23349068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 11756 - 11722
Alignment:
Q  189 tatcatacttatatctaatctttgttaatattgct 223  Q
    |||||||||||||||||||||||||||| ||||||    
T  11756 tatcatacttatatctaatctttgttaacattgct 11722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 43071504 - 43071470
Alignment:
Q  189 tatcatacttatatctaatctttgttaatattgct 223  Q
    |||||||||||||||||||||||||||| ||||||    
T  43071504 tatcatacttatatctaatctttgttaacattgct 43071470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 1262088 - 1262121
Alignment:
Q  190 atcatacttatatctaatctttgttaatattgct 223  Q
    ||||||||||||||||||||||||||| ||||||    
T  1262088 atcatacttatatctaatctttgttaacattgct 1262121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 26910102 - 26910069
Alignment:
Q  190 atcatacttatatctaatctttgttaatattgct 223  Q
    ||||||||||||||||||||||||||| ||||||    
T  26910102 atcatacttatatctaatctttgttaacattgct 26910069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 48849928 - 48849895
Alignment:
Q  190 atcatacttatatctaatctttgttaatattgct 223  Q
    ||||||||||||||||||||||||||| ||||||    
T  48849928 atcatacttatatctaatctttgttaacattgct 48849895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 53973408 - 53973374
Alignment:
Q  189 tatcatacttatatctaatctttgttaatattgct 223  Q
    |||||||||||||||||||||||||||| ||||||    
T  53973408 tatcatacttatatctaatctttgttaacattgct 53973374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 37982349 - 37982382
Alignment:
Q  190 atcatacttatatctaatctttgttaatattgct 223  Q
    ||||||||||||||||||||||||||| ||||||    
T  37982349 atcatacttatatctaatctttgttaacattgct 37982382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 223
Target Start/End: Original strand, 50990902 - 50990940
Alignment:
Q  185 atcatatcatacttatatctaatctttgttaatattgct 223  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  50990902 atcatatcttacttatatctaatctttgttaacattgct 50990940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 14041 - 14008
Alignment:
Q  190 atcatacttatatctaatctttgttaatattgct 223  Q
    ||||||||||||||||||||||||||| ||||||    
T  14041 atcatacttatatctaatctttgttaacattgct 14008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 27410 - 27443
Alignment:
Q  190 atcatacttatatctaatctttgttaatattgct 223  Q
    ||||||||||||||||||||||||||| ||||||    
T  27410 atcatacttatatctaatctttgttaacattgct 27443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 35063 - 35096
Alignment:
Q  190 atcatacttatatctaatctttgttaatattgct 223  Q
    ||||||||||||||||||||||||||| ||||||    
T  35063 atcatacttatatctaatctttgttaacattgct 35096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 12506436 - 12506469
Alignment:
Q  190 atcatacttatatctaatctttgttaatattgct 223  Q
    ||||||||||||||||||||||||||| ||||||    
T  12506436 atcatacttatatctaatctttgttaacattgct 12506469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 29863482 - 29863449
Alignment:
Q  190 atcatacttatatctaatctttgttaatattgct 223  Q
    ||||||||||||||||||||||||||| ||||||    
T  29863482 atcatacttatatctaatctttgttaacattgct 29863449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University