View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3820_low_138 (Length: 249)
Name: NF3820_low_138
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_138 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 4236085 - 4235849
Alignment:
| Q |
13 |
agcaaaggagagttcagatattgttatattagatgacaattttgcatctatagtaacagttataaattggggaagatgtgtttacaacaacattcaaaaa |
112 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4236085 |
agcaaaagagagttcagatattgttatattagatgacaattttgcatctattgtaacagttataaattggggaagatgtgtttacaacaacattcaaaaa |
4235986 |
T |
|
| Q |
113 |
ttcattcaatttcaattaacagtgaatgtggcagcacttgttataaattttgtcgcggcggtttcagcaggcgaagttccgttaacagcagtttaattat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4235985 |
ttcattcaatttcaattaacagtgaatgtggcagcacttgttataaattttgtcgcggcggtttcagcaggcgaagttccgttaacagcagttcaattat |
4235886 |
T |
|
| Q |
213 |
tatgggtggatttgattatggatacatttggtgcatt |
249 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
4235885 |
tatgggtgaatttgattatggatacattaggtgcatt |
4235849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 30441409 - 30441448
Alignment:
| Q |
201 |
cagtttaattattatgggtggatttgattatggatacatt |
240 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
30441409 |
cagttcaattattatgggtgaatttgattatggatacatt |
30441448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 14 - 246
Target Start/End: Complemental strand, 6185208 - 6184976
Alignment:
| Q |
14 |
gcaaaggagagttcagatattgttatattagatgacaattttgcatctatagtaacagttataaattggggaagatgtgtttacaacaacattcaaaaat |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6185208 |
gcaaaagagagttcagatattgttatattagatgacaattttgcatctatcgtaacagtgttaaactggggaagatgtgtttacaacaacattcaaaaat |
6185109 |
T |
|
| Q |
114 |
tcattcaatttcaattaacagtgaatgtggcagcacttgttataaattttgtcgcggcggtttcagcaggcgaagttccgttaacagcagtttaattatt |
213 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||| ||||| || |||||||||||||| || ||||| || |||||||||||| ||||||| |
|
|
| T |
6185108 |
tcattcaatttcaactaacagtgaatgtggcagcccttgttatcaatttcgttgcggcggtttcagccggtgaagtaccattaacagcagttcaattatt |
6185009 |
T |
|
| Q |
214 |
atgggtggatttgattatggatacatttggtgc |
246 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||| |
|
|
| T |
6185008 |
atgggtgaatttgattatggatacattaggtgc |
6184976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 14 - 161
Target Start/End: Complemental strand, 19592967 - 19592829
Alignment:
| Q |
14 |
gcaaaggagagttcagatattgttatattagatgacaattttgcatctatagtaacagttataaattggggaagatgtgtttacaacaacattcaaaaat |
113 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19592967 |
gcaaaagagagctcagatattgttatattagatgacaattttgcatctatagtaacaattttaaattggggaagatgtgtttacaacaacattcaaaaat |
19592868 |
T |
|
| Q |
114 |
tcattcaatttcaattaacagtgaatgtggcagcacttgttataaatt |
161 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
19592867 |
tcattcaatt---------agtgaatgtggcagcacttgttatcaatt |
19592829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 80 - 159
Target Start/End: Complemental strand, 38356962 - 38356883
Alignment:
| Q |
80 |
tggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaattaacagtgaatgtggcagcacttgttataaa |
159 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| ||||| |||||| ||||||||||||| ||||||||||| ||||| |
|
|
| T |
38356962 |
tggggaagatgtgtttacaacaacatccagaaatttattcagtttcaactaacagtgaatgttgcagcacttgtgataaa |
38356883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University