View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_140 (Length: 249)
Name: NF3820_low_140
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_140 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 13396082 - 13395849
Alignment:
| Q |
1 |
ttacaattagttgtataatgcatacgaggaattaacttgaataatcttgatcgtttgattgagctacaatttaaatcagacaactgagatttgacttaac |
100 |
Q |
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| T |
13396082 |
ttacaattagttgtataatgcatatgagggattaacttgaataatcttgatgatttgattgagctacaatttaaatcagacaactgagatttgacttaat |
13395983 |
T |
|
| Q |
101 |
tatggacaatcgtacagaattcaagttgatgctctaaactctaatccttttgcaagaacaatacagttggtcaaatttgatttcaaactgaacaatgcat |
200 |
Q |
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|||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
13395982 |
gatggacaaccgtagagaattcaagttgttgctctaaactctaatccttttgcaagaccaatacagttggtcaaatttgatttcaaactgaacaatgcat |
13395883 |
T |
|
| Q |
201 |
aagctcttcacaagttgtgtacaaagaatgggtt |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
13395882 |
aagctcttcacaagttgtgtacaaagaatgggtt |
13395849 |
T |
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