View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_142 (Length: 248)
Name: NF3820_low_142
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_142 |
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Alignment Details
Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 31621506 - 31621601
Alignment:
| Q |
1 |
tatgtcatttcttatctagtttaagttgtcttatgagaaataatgagcttccaattagtgccctgtcatgttgtaatgttgtggtgtgttaaaatt |
96 |
Q |
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| T |
31621506 |
tatgtcatttcttatctagtttaagttgtcttatgagaaataatgagcttccaattagtgccctctcatgttgtaatgttgtggtgtgttaaaatt |
31621601 |
T |
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Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 36667188 - 36667248
Alignment:
| Q |
1 |
tatgtcatttcttatctagtttaagttgtcttatgagaaataatgagcttccaattagtgc |
61 |
Q |
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| T |
36667188 |
tatgttatttcttatctagtttaagttgtcttatgagaaataatgagcttccaattagtgc |
36667248 |
T |
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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 96
Target Start/End: Original strand, 36668611 - 36668650
Alignment:
| Q |
57 |
agtgccctgtcatgttgtaatgttgtggtgtgttaaaatt |
96 |
Q |
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| T |
36668611 |
agtgccctgtgatgttgtaatgttgtggtgtgttaaaatt |
36668650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 16728410 - 16728315
Alignment:
| Q |
1 |
tatgtcatttcttatctagtttaagttgtcttatgagaaataatgagcttccaattagtgccctgtcatgttgtaatgttgtggtgtgttaaaatt |
96 |
Q |
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| T |
16728410 |
tatgtcatttcttctctagtttaagttgtcttatgagaaataatgagctttcaattagtgccctgtcatgttgtaatgttgtggtgtgttaaaatt |
16728315 |
T |
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Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 36574624 - 36574529
Alignment:
| Q |
1 |
tatgtcatttcttatctagtttaagttgtcttatgagaaataatgagcttccaattagtgccctgtcatgttgtaatgttgtggtgtgttaaaatt |
96 |
Q |
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| T |
36574624 |
tatgtcatttcttatctagtttaagttgtcttatgagaaataaagagcttccaattagtgccctctcatgttgtaatgttgtggtgtgttaaaatt |
36574529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 26530169 - 26530074
Alignment:
| Q |
1 |
tatgtcatttcttatctagtttaagttgtcttatgagaaataatgagcttccaattagtgccctgtcatgttgtaatgttgtggtgtgttaaaatt |
96 |
Q |
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| T |
26530169 |
tatgttatttcgtatctagtttaagttgtcttatgagaaataatgagcttccaattagtgccctctgatgttgtaatgttgtggtgtgttaaaatt |
26530074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 49918857 - 49918790
Alignment:
| Q |
7 |
atttcttatctagtttaagttgtcttatgagaaataatgagcttccaattagtgccctgtcatgttgt |
74 |
Q |
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| T |
49918857 |
atttcttatctagtttaagttgttttatgagaaataatgagctttcaataagtgcactgtaatgttgt |
49918790 |
T |
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