View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3820_low_143 (Length: 248)

Name: NF3820_low_143
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3820_low_143
NF3820_low_143
[»] chr4 (11 HSPs)
chr4 (82-248)||(55240562-55240728)
chr4 (146-234)||(11784977-11785065)
chr4 (96-178)||(23564540-23564622)
chr4 (116-180)||(36165464-36165528)
chr4 (96-189)||(9928957-9929051)
chr4 (120-229)||(55240381-55240488)
chr4 (116-169)||(18523020-18523073)
chr4 (115-232)||(36165892-36166009)
chr4 (107-232)||(23564275-23564400)
chr4 (96-168)||(8837026-8837098)
chr4 (116-169)||(18523215-18523268)
[»] scaffold1432 (1 HSPs)
scaffold1432 (107-234)||(936-1063)
[»] chr3 (8 HSPs)
chr3 (96-180)||(50196900-50196984)
chr3 (107-169)||(30135504-30135566)
chr3 (107-169)||(30141633-30141695)
chr3 (107-169)||(30145055-30145117)
chr3 (107-180)||(30130784-30130857)
chr3 (125-245)||(50197087-50197207)
chr3 (116-180)||(20490917-20490982)
chr3 (115-234)||(11047444-11047563)
[»] chr5 (4 HSPs)
chr5 (96-169)||(8402114-8402187)
chr5 (96-169)||(8401985-8402058)
chr5 (192-244)||(10668481-10668532)
chr5 (120-180)||(6423984-6424044)
[»] chr8 (4 HSPs)
chr8 (115-178)||(30525435-30525498)
chr8 (107-246)||(12704205-12704333)
chr8 (109-232)||(28883660-28883779)
chr8 (120-169)||(30525232-30525281)
[»] chr1 (5 HSPs)
chr1 (116-160)||(3371665-3371709)
chr1 (121-169)||(12178099-12178147)
chr1 (107-180)||(10645792-10645865)
chr1 (154-232)||(28843427-28843505)
chr1 (120-180)||(25685733-25685793)
[»] chr7 (5 HSPs)
chr7 (116-185)||(8745873-8745942)
chr7 (120-169)||(23972473-23972522)
chr7 (187-232)||(29155797-29155842)
chr7 (115-232)||(41243213-41243330)
chr7 (115-147)||(35035425-35035457)
[»] chr2 (5 HSPs)
chr2 (142-235)||(36053556-36053649)
chr2 (107-169)||(18203095-18203157)
chr2 (107-169)||(30841546-30841608)
chr2 (128-185)||(43829620-43829677)
chr2 (119-168)||(43829826-43829875)
[»] chr6 (2 HSPs)
chr6 (115-169)||(10742262-10742316)
chr6 (125-219)||(27134291-27134385)


Alignment Details
Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 82 - 248
Target Start/End: Complemental strand, 55240728 - 55240562
Alignment:
Q  82 aataatggtttcaatgataacatgctaaatagatttggatctcatcccaaaagctcgctcaaaagatgagggtactcaaacatatttacatactcaacat 181  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  55240728 aataatggtttcaatgataccatgctaaatagatttggatctcatcccaaaagctcgctcaaaagatgagggtactcaagcatatttatatactcaacat 55240629  T
Q  182 tccgaaaatttgagcaatacgagactaacaacaaactacaaataacttcaacacccaccctcacgtc 248  Q
     | ||||| ||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||    
T  55240628 cctgaaaacttgagcaatacgaaactaacaacaaactacaaacaacttcaacatccaccctcacgtc 55240562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 146 - 234
Target Start/End: Complemental strand, 11785065 - 11784977
Alignment:
Q  146 gatgagggtactcaaacatatttacatactcaacattccgaaaatttgagcaatacgagactaacaacaaactacaaataacttcaaca 234  Q
    |||||||||||||||||||||||| | |||||||| ||||| ||  |||| |||  | |||||||||||||||||||| ||||||||||    
T  11785065 gatgagggtactcaaacatatttatacactcaacagtccgagaacctgagtaatgtgggactaacaacaaactacaaacaacttcaaca 11784977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 178
Target Start/End: Original strand, 23564540 - 23564622
Alignment:
Q  96 tgataacatgctaaatagatttggatctcatcccaaaagctcgctcaaaagatgagggtactcaaacatatttacatactcaa 178  Q
    ||||| |||| ||||||| |||||||||||||||||||| | ||||||| ||||||||||||||| |||| || || ||||||    
T  23564540 tgataccatgttaaataggtttggatctcatcccaaaagttagctcaaaggatgagggtactcaagcatacttgcacactcaa 23564622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 36165464 - 36165528
Alignment:
Q  116 ttggatctcatcccaaaagctcgctcaaaagatgagggtactcaaacatatttacatactcaaca 180  Q
    |||||||||||||||||| || || |||||||||||||||||||||||| |||| | ||||||||    
T  36165464 ttggatctcatcccaaaatctagcacaaaagatgagggtactcaaacatctttatacactcaaca 36165528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 189
Target Start/End: Original strand, 9928957 - 9929051
Alignment:
Q  96 tgataacatgctaaatagatttgga-tctcatcccaaaagctcgctcaaaagatgagggtactcaaacatatttacatactcaacattccgaaaa 189  Q
    ||||| |||| |||||||  ||||| ||| || ||||||| | ||||||||||||||| |||||||||||||||| |||||||||  ||||||||    
T  9928957 tgataccatgttaaataggcttggaatcttattccaaaagttagctcaaaagatgaggatactcaaacatatttatatactcaacgatccgaaaa 9929051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 229
Target Start/End: Complemental strand, 55240488 - 55240381
Alignment:
Q  120 atctcatcccaaaagctcgctcaaaagatgagggtactcaaacatatttacatactcaacattccgaaaatttgagcaatacgagactaacaacaaacta 219  Q
    |||||||||||||||||  |||||| ||||||| |||||||  ||||||||  ||||||||  | |||||  |||||||||  | |||||||||||||||    
T  55240488 atctcatcccaaaagctaactcaaaggatgaggatactcaagtatatttac--actcaacaacctgaaaacctgagcaatataaaactaacaacaaacta 55240391  T
Q  220 caaataactt 229  Q
    |||| |||||    
T  55240390 caaacaactt 55240381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 18523020 - 18523073
Alignment:
Q  116 ttggatctcatcccaaaagctcgctcaaaagatgagggtactcaaacatattta 169  Q
    ||||||||||| ||||||||||||||||| ||||| ||||||||| ||||||||    
T  18523020 ttggatctcataccaaaagctcgctcaaaggatgatggtactcaagcatattta 18523073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 232
Target Start/End: Original strand, 36165892 - 36166009
Alignment:
Q  115 tttggatctcatcccaaaagctcgctcaaaagatgagggtactcaaacatatttacatactcaacattccgaaaatttgagcaatacgagactaacaaca 214  Q
    ||||||||||||| |||||| | ||| ||| ||||||||| ||||||||| |||| | ||||||||| ||||||   |||  |||  |||||||| || |    
T  36165892 tttggatctcatcgcaaaagttagcttaaaggatgagggtgctcaaacatgtttatacactcaacatcccgaaagcctgaataatgtgagactaaaaata 36165991  T
Q  215 aactacaaataacttcaa 232  Q
    ||||||||| ||||||||    
T  36165992 aactacaaacaacttcaa 36166009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 232
Target Start/End: Original strand, 23564275 - 23564400
Alignment:
Q  107 taaatagatttggatctcatcccaaaagctcgctcaaaagatgagggtactcaaacatatttacatactcaacattccgaaaatttgagcaatacgagac 206  Q
    ||||| || ||||||||||||||||| |||  || ||||||||| ||| || ||||||| ||| | ||||||||  | |||||  ||||||||  | |||    
T  23564275 taaattgacttggatctcatcccaaatgctaacttaaaagatgaaggttctaaaacatacttatacactcaacaacctgaaaacctgagcaatgtgggac 23564374  T
Q  207 taacaacaaactacaaataacttcaa 232  Q
     || ||||||||||||| ||||||||    
T  23564375 aaataacaaactacaaacaacttcaa 23564400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 8837026 - 8837098
Alignment:
Q  96 tgataacatgctaaatagatttggatctcatcccaaaagctcgctcaaaagatgagggtactcaaacatattt 168  Q
    ||||| |||| ||||||| |||| |||||||||||||   | |||||||  ||||||||||||||||||||||    
T  8837026 tgataccatgttaaataggtttgaatctcatcccaaagtttagctcaaagaatgagggtactcaaacatattt 8837098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 18523215 - 18523268
Alignment:
Q  116 ttggatctcatcccaaaagctcgctcaaaagatgagggtactcaaacatattta 169  Q
    ||||||||  ||||||||| |  |||||| ||||||||||||||||||||||||    
T  18523215 ttggatctgctcccaaaagatacctcaaaggatgagggtactcaaacatattta 18523268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1432 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold1432
Description:

Target: scaffold1432; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 107 - 234
Target Start/End: Original strand, 936 - 1063
Alignment:
Q  107 taaatagatttggatctcatcccaaaagctcgctcaaaagatgagggtactcaaacatatttacatactcaacattccgaaaat-ttgagcaatacgaga 205  Q
    |||||||| ||  |||||||||||||||||| |||||| ||||||| |||||||||||||||| | | ||||||  || |  ||  ||||| ||| ||||    
T  936 taaatagacttaaatctcatcccaaaagctcactcaaaggatgaggatactcaaacatatttatacattcaaca-acctatgatcctgagcgatatgaga 1034  T
Q  206 ctaacaacaaactacaaataacttcaaca 234  Q
    |||||||||||||||||| ||||||||||    
T  1035 ctaacaacaaactacaaacaacttcaaca 1063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 96 - 180
Target Start/End: Complemental strand, 50196984 - 50196900
Alignment:
Q  96 tgataacatgctaaatagatttggatctcatcccaaaagctcgctcaaaagatgagggtactcaaacatatttacatactcaaca 180  Q
    ||||| |||| ||||||| |||||||||||||||||||| | ||||||| |||||||||| | ||||||||||| | ||||||||    
T  50196984 tgataccatgttaaataggtttggatctcatcccaaaagttagctcaaaggatgagggtatttaaacatatttatacactcaaca 50196900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 30135504 - 30135566
Alignment:
Q  107 taaatagatttggatctcatcccaaaagctcgctcaaaagatgagggtactcaaacatattta 169  Q
    |||||||  ||||||||||||||||||| | ||||||| ||||||||||||||| ||||||||    
T  30135504 taaataggcttggatctcatcccaaaagttagctcaaatgatgagggtactcaagcatattta 30135566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 30141633 - 30141695
Alignment:
Q  107 taaatagatttggatctcatcccaaaagctcgctcaaaagatgagggtactcaaacatattta 169  Q
    |||||||  ||||||||||||||||||| | ||||||| ||||||||||||||| ||||||||    
T  30141633 taaataggcttggatctcatcccaaaagttagctcaaatgatgagggtactcaagcatattta 30141695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 30145055 - 30145117
Alignment:
Q  107 taaatagatttggatctcatcccaaaagctcgctcaaaagatgagggtactcaaacatattta 169  Q
    |||||||  ||||||||||||||||||| | ||||||| ||||||||||||||| ||||||||    
T  30145055 taaataggcttggatctcatcccaaaagttagctcaaatgatgagggtactcaagcatattta 30145117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 180
Target Start/End: Original strand, 30130784 - 30130857
Alignment:
Q  107 taaatagatttggatctcatcccaaaagctcgctcaaaagatgagggtactcaaacatatttacatactcaaca 180  Q
    ||||||| ||||||||||||||||||| || ||||||| ||||| | ||||||| |||||||| | ||||||||    
T  30130784 taaataggtttggatctcatcccaaaaactagctcaaatgatgaagatactcaagcatatttatacactcaaca 30130857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 245
Target Start/End: Complemental strand, 50197207 - 50197087
Alignment:
Q  125 atcccaaaagctcgctcaaaagatgagggtactcaaacatatttacatactcaacattccgaaaatttgagcaatacgagactaacaacaaactacaaat 224  Q
    |||||||||||| | ||||| ||||||||||||| | |||||||| | |||||||| | ||  ||  ||||||||  | ||| || ||||||||| |||     
T  50197207 atcccaaaagctagatcaaaggatgagggtactcgaccatatttatacactcaacagttcgtgaacctgagcaatgtgggacaaataacaaactataaac 50197108  T
Q  225 aacttcaacacccaccctcac 245  Q
    ||||||||||||||| |||||    
T  50197107 aacttcaacacccactctcac 50197087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 20490982 - 20490917
Alignment:
Q  116 ttggatctcatcccaaaa-gctcgctcaaaagatgagggtactcaaacatatttacatactcaaca 180  Q
    |||||||||||||||||| ||| |||||||||| ||||||||||||  ||||||| | ||||||||    
T  20490982 ttggatctcatcccaaaaagctagctcaaaagacgagggtactcaagtatatttatacactcaaca 20490917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 234
Target Start/End: Complemental strand, 11047563 - 11047444
Alignment:
Q  115 tttggatctcatcccaaaagctcgctcaaaagatgagggtactcaaacatatttacatactcaacattccgaaaatttgagcaatacgagactaacaaca 214  Q
    |||||||||||||  ||||| | ||||||| ||||||||||||||| | |||||| | ||||||||   |  |||  ||||||||  | |||||  ||||    
T  11047563 tttggatctcatcataaaagttagctcaaaggatgagggtactcaagcgtatttatacactcaacagcgcacaaacctgagcaatgtgggactagaaaca 11047464  T
Q  215 aactacaaataacttcaaca 234  Q
    ||||||||| ||||||||||    
T  11047463 aactacaaacaacttcaaca 11047444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 96 - 169
Target Start/End: Original strand, 8402114 - 8402187
Alignment:
Q  96 tgataacatgctaaatagatttggatctcatcccaaaagctcgctcaaaagatgagggtactcaaacatattta 169  Q
    ||||| |||| |||||| |||||||| |||||||||||| | ||||||| || |||||||||||||||||||||    
T  8402114 tgataccatgttaaataaatttggatttcatcccaaaagttagctcaaaggaggagggtactcaaacatattta 8402187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 169
Target Start/End: Original strand, 8401985 - 8402058
Alignment:
Q  96 tgataacatgctaaatagatttggatctcatcccaaaagctcgctcaaaagatgagggtactcaaacatattta 169  Q
    ||||| |||| ||||||  |||||||||||| ||||||| | ||||||| || |||||||||||| ||||||||    
T  8401985 tgataccatgttaaataagtttggatctcattccaaaagttagctcaaaggaggagggtactcaagcatattta 8402058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 10668532 - 10668481
Alignment:
Q  192 tgagcaatacgagactaacaacaaactacaaataacttcaacacccaccctca 244  Q
    ||||||||  |||||||| ||||||||||||| ||||||||||||||||||||    
T  10668532 tgagcaatgtgagactaa-aacaaactacaaacaacttcaacacccaccctca 10668481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 6424044 - 6423984
Alignment:
Q  120 atctcatcccaaaagctcgctcaaaagatgagggtactcaaacatatttacatactcaaca 180  Q
    ||||||||| |||| || ||| ||||||||| | |||||||||||||||| | ||||||||    
T  6424044 atctcatcctaaaaactagcttaaaagatgatgatactcaaacatatttatacactcaaca 6423984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 178
Target Start/End: Complemental strand, 30525498 - 30525435
Alignment:
Q  115 tttggatctcatcccaaaagctcgctcaaaagatgagggtactcaaacatatttacatactcaa 178  Q
    |||||||||||||| ||||| | ||||||||||||| |||||||||||||||||| | ||||||    
T  30525498 tttggatctcatccaaaaaggtagctcaaaagatgaaggtactcaaacatatttatacactcaa 30525435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 246
Target Start/End: Complemental strand, 12704333 - 12704205
Alignment:
Q  107 taaatagatttggatctcatcccaaaagctcgctcaaaagatgagggtactcaaacatatttacatactcaacattccgaaaatttgagcaatacgagac 206  Q
    ||||||| ||||||||| |||| ||||||| || |||||||||| ||||||||||||||||||        |||||    |||||||||| ||  | |||    
T  12704333 taaataggtttggatcttatcc-aaaagctagcacaaaagatgaaggtactcaaacatattta-------tacatt---taaatttgagcgatgtgggac 12704245  T
Q  207 taacaacaaactacaaataacttcaacacccaccctcacg 246  Q
    ||||||||||||||||| ||||||||||  ||||||||||    
T  12704244 taacaacaaactacaaacaacttcaacattcaccctcacg 12704205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 232
Target Start/End: Original strand, 28883660 - 28883779
Alignment:
Q  109 aatagatttggatctcatcccaaaagctcgctcaaaagatgagggtactcaaacatatttacatactcaacattccgaaaatttgagcaatacgagacta 208  Q
    ||||| ||||||||||||| ||||||||  |||  |  ||||||||||||||||||||||| | ||| ||||  |||||||  |||||     | |||||    
T  28883660 aataggtttggatctcatctcaaaagctacctcggagaatgagggtactcaaacatatttatacacttaacaacccgaaaacctgagc----tgggacta 28883755  T
Q  209 acaacaaactacaaataacttcaa 232  Q
    ||||||||||||||| ||||||||    
T  28883756 acaacaaactacaaacaacttcaa 28883779  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 30525281 - 30525232
Alignment:
Q  120 atctcatcccaaaagctcgctcaaaagatgagggtactcaaacatattta 169  Q
    ||||||||||||||||| |||||||  ||||| |||||||||||||||||    
T  30525281 atctcatcccaaaagctagctcaaagaatgagagtactcaaacatattta 30525232  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 3371709 - 3371665
Alignment:
Q  116 ttggatctcatcccaaaagctcgctcaaaagatgagggtactcaa 160  Q
    |||||||||||||||||||||  ||||||||||||||||||||||    
T  3371709 ttggatctcatcccaaaagctacctcaaaagatgagggtactcaa 3371665  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 12178099 - 12178147
Alignment:
Q  121 tctcatcccaaaagctcgctcaaaagatgagggtactcaaacatattta 169  Q
    |||||||||||||||| | ||||| ||||||||||||||||||||||||    
T  12178099 tctcatcccaaaagctaggtcaaaggatgagggtactcaaacatattta 12178147  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 10645865 - 10645792
Alignment:
Q  107 taaatagatttggatctcatcccaaaagctcgctcaaaagatgagggtactcaaacatatttacatactcaaca 180  Q
    ||||||| ||| |||||||||  ||||| | |||| || |||||||||||||||||||||||| | ||||||||    
T  10645865 taaataggttttgatctcatcttaaaagatagctctaaggatgagggtactcaaacatatttatacactcaaca 10645792  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 28843427 - 28843505
Alignment:
Q  154 tactcaaacatatttacatactcaacattccgaaaatttgagcaatacgagactaacaacaaactacaaataacttcaa 232  Q
    ||||||| |||||||| | |||||||  |||||||| |||||| ||  || ||||| ||||||||||||| ||||||||    
T  28843427 tactcaagcatatttatacactcaacggtccgaaaacttgagcgatgtgaaactaaaaacaaactacaaacaacttcaa 28843505  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 25685793 - 25685733
Alignment:
Q  120 atctcatcccaaaagctcgctcaaaagatgagggtactcaaacatatttacatactcaaca 180  Q
    |||| |||| ||||||| ||||||| |||||| ||| ||||||||||||| | ||||||||    
T  25685793 atcttatcctaaaagctagctcaaatgatgagagtattcaaacatatttatacactcaaca 25685733  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 8745873 - 8745942
Alignment:
Q  116 ttggatctcatcccaaaagctcgctcaaaagatgagggtactcaaacatatttacatactcaacattccg 185  Q
    ||||||||||||||||||| | ||| ||| ||||||| ||||| |||||||||| | |||||||| ||||    
T  8745873 ttggatctcatcccaaaagttagcttaaaggatgaggatactcgaacatatttatacactcaacagtccg 8745942  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 23972522 - 23972473
Alignment:
Q  120 atctcatcccaaaagctcgctcaaaagatgagggtactcaaacatattta 169  Q
    ||||||| ||||||| |  |||||| ||||||||||||||||||||||||    
T  23972522 atctcattccaaaagttaactcaaaggatgagggtactcaaacatattta 23972473  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 29155797 - 29155842
Alignment:
Q  187 aaatttgagcaatacgagactaacaacaaactacaaataacttcaa 232  Q
    |||||||||| ||| |||||||||||||||||| ||||||| ||||    
T  29155797 aaatttgagctatatgagactaacaacaaactataaataacatcaa 29155842  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 232
Target Start/End: Original strand, 41243213 - 41243330
Alignment:
Q  115 tttggatctcatcccaaaagctcgctcaaaagatgagggtactcaaacatatttacatactcaacattccgaaaatttgagcaatacgagactaacaaca 214  Q
    |||||||||||||||||||| | ||||||  ||||||| |||||||  ||||||| | |||| |||  | |||||  | ||||||| | ||| || ||||    
T  41243213 tttggatctcatcccaaaagttagctcaacggatgaggttactcaagtatatttatagactccacaacctgaaaacctaagcaatatgggacaaataaca 41243312  T
Q  215 aactacaaataacttcaa 232  Q
    ||||||||| ||| ||||    
T  41243313 aactacaaacaacgtcaa 41243330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 147
Target Start/End: Original strand, 35035425 - 35035457
Alignment:
Q  115 tttggatctcatcccaaaagctcgctcaaaaga 147  Q
    |||||||||||||||||||||| ||||||||||    
T  35035425 tttggatctcatcccaaaagctagctcaaaaga 35035457  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 36053556 - 36053649
Alignment:
Q  142 aaaagatgagggtactcaaacatatttacatactcaacattccgaaaatttgagcaatacgagactaacaacaaactacaaataacttcaacac 235  Q
    |||||||||  ||| ||||||||||||||| ||| |||| ||| | ||  |||||||||||  ||||| | ||||||||||| |||||||||||    
T  36053556 aaaagatgaaagtattcaaacatatttacacactaaacagtccaagaacctgagcaatacggaactaaaagcaaactacaaacaacttcaacac 36053649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 18203095 - 18203157
Alignment:
Q  107 taaatagatttggatctcatcccaaaagctcgctcaaaagatgagggtactcaaacatattta 169  Q
    |||||||||||| ||||||||| ||||| | | ||||| |||||||||| | |||||||||||    
T  18203095 taaatagatttgaatctcatcctaaaagttagttcaaatgatgagggtatttaaacatattta 18203157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 30841546 - 30841608
Alignment:
Q  107 taaatagatttggatctcatcccaaaagctcgctcaaaagatgagggtactcaaacatattta 169  Q
    ||||||| |||||||||||||||| ||| | | | ||| ||||||| ||||||||||||||||    
T  30841546 taaataggtttggatctcatcccacaagttagtttaaaggatgaggatactcaaacatattta 30841608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 185
Target Start/End: Original strand, 43829620 - 43829677
Alignment:
Q  128 ccaaaagctcgctcaaaagatgagggtactcaaacatatttacatactcaacattccg 185  Q
    ||||||||| |||||||  |||||| |||||||||||||||| | |||||||| ||||    
T  43829620 ccaaaagctagctcaaagaatgaggatactcaaacatatttatacactcaacagtccg 43829677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 43829826 - 43829875
Alignment:
Q  119 gatctcatcccaaaagctcgctcaaaagatgagggtactcaaacatattt 168  Q
    ||||||||||||| |||| ||||||  ||||||||||||||| |||||||    
T  43829826 gatctcatcccaacagctagctcaatggatgagggtactcaagcatattt 43829875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 10742316 - 10742262
Alignment:
Q  115 tttggatctcatcccaaaagctcgctcaaaagatgagggtactcaaacatattta 169  Q
    ||||||||||||||||||||||   ||||| ||| ||||||| ||||||||||||    
T  10742316 tttggatctcatcccaaaagctaaatcaaatgattagggtacccaaacatattta 10742262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 27134385 - 27134291
Alignment:
Q  125 atcccaaaagctcgctcaaaagatgagggtactcaaacatatttacatactcaacattccgaaaatttgagcaatacgagactaacaacaaacta 219  Q
    ||||||||||||   |||| ||||| | ||||||||||||||||| | ||||||||   ||| ||| | ||||||  ||||||||||||||||||    
T  27134385 atcccaaaagctgattcaatagatgtgagtactcaaacatatttatacactcaacaactcgagaatctaagcaatgtgagactaacaacaaacta 27134291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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