View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_144 (Length: 247)
Name: NF3820_low_144
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_144 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 8723578 - 8723347
Alignment:
| Q |
1 |
ttgtttgttttatatatttacctggtaattcccatggttcgaacttgcgaatatcaacttcagctataacattgtttacaatggcgtcataaccaagcaa |
100 |
Q |
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| T |
8723578 |
ttgtttgttttatatatttacctggtaattcccatggttcgaacttgcgaatatcaacttcagctataacattgtttacaatggcgtcattaccaagcaa |
8723479 |
T |
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| Q |
101 |
cttatttctaaggtagtggttaactagctcttcacctgttggacaaaatctgaatccaacataatgaagaatgggaggaaatgagggtgtcatttgtctg |
200 |
Q |
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| T |
8723478 |
cttatttctaaggtagtgattaactagctcttcacctgttggacaaaatctgaatccaacataatgaagaatgggaggaaatgagggtgtcatttgtctg |
8723379 |
T |
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| Q |
201 |
ctaggctccccttcatcacacatcattgtatc |
232 |
Q |
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| T |
8723378 |
ctaggctccccttcatcacacatcattgtatc |
8723347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 8740216 - 8739998
Alignment:
| Q |
17 |
tttacctggtaattcccatggttcgaacttgcgaatatcaacttcagctataacattgtttacaatggcgtcataaccaagcaacttatttctaaggtag |
116 |
Q |
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| T |
8740216 |
tttacctggtaagtcccaaggttcgtacttgcatacatcaacttcagctataacattgtttacaatggaatcattaccaggtatcttatttttaaggtag |
8740117 |
T |
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| Q |
117 |
t-ggttaactagctcttcacctgttggacaaaatctgaatcc---aacataatgaagaatgggaggaaatgagggtgtcatttgtctgctaggctcccct |
212 |
Q |
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| T |
8740116 |
tacattaacaagctcttcatctgtaggacagaatctaagtccaagaacaaaatcaatagttggaggaaaagaggttgtcatttgtctggaagactcccct |
8740017 |
T |
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| Q |
213 |
tcatcacacatcattgtat |
231 |
Q |
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| T |
8740016 |
tcatcacacaccattgtat |
8739998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 8690867 - 8690724
Alignment:
| Q |
18 |
ttacctggtaattcccatggttcgaacttgcgaatatcaacttcagctataacattgtttacaatggcgtcataaccaagcaacttatttctaaggtagt |
117 |
Q |
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| T |
8690867 |
ttacctggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaacttttttttgagatagt |
8690768 |
T |
|
| Q |
118 |
ggttaactagctcttcacctgttggacaaaatctgaatccaaca |
161 |
Q |
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| T |
8690767 |
ggtttacaagctcttcatctgttggtcggaatctgaatccaaca |
8690724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 8705140 - 8704996
Alignment:
| Q |
17 |
tttacctggtaattcccatggttcgaacttgcgaatatcaacttcagctataacattgtttacaatggcgtcataaccaagcaacttatttctaaggtag |
116 |
Q |
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|||||||||||| ||||| ||||| | |||| | |||||||||||||||||||||||||||||||| |||| |||||| ||||| ||| | || ||| |
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| T |
8705140 |
tttacctggtaagtcccaaggttcatagttgcatacatcaacttcagctataacattgtttacaatggaatcattaccaagtaacttttttttgagatag |
8705041 |
T |
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| Q |
117 |
tggttaactagctcttcacctgttggacaaaatctgaatccaaca |
161 |
Q |
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| T |
8705040 |
tggtttacaagctcttcatctgttggtcggaatctgaatccaaca |
8704996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 161
Target Start/End: Complemental strand, 8722220 - 8722073
Alignment:
| Q |
14 |
atatttacctggtaattcccatggttcgaacttgcgaatatcaacttcagctataacattgtttacaatggcgtcataaccaagcaacttatttctaagg |
113 |
Q |
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| T |
8722220 |
atatttacctggtaaatcccaaggtttaaacttgaatacatcaacttcagctatgacattgttaacaaactcttcattgccaagtaacttgtttctgaga |
8722121 |
T |
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| Q |
114 |
tagtggttaactagctcttcacctgttggacaaaatctgaatccaaca |
161 |
Q |
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|||| ||| || ||||||| | |||||||| ||||||||||||||| |
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| T |
8722120 |
tagtagtttacaagctcttgatctgttggatggaatctgaatccaaca |
8722073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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