View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3820_low_148 (Length: 246)

Name: NF3820_low_148
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3820_low_148
NF3820_low_148
[»] chr6 (43 HSPs)
chr6 (1-243)||(25579839-25580081)
chr6 (1-246)||(26056046-26056291)
chr6 (1-246)||(26076016-26076261)
chr6 (1-243)||(26142985-26143227)
chr6 (4-246)||(25538663-25538905)
chr6 (1-243)||(25481862-25482104)
chr6 (1-243)||(26646599-26646838)
chr6 (1-243)||(26752567-26752806)
chr6 (1-242)||(27337894-27338132)
chr6 (1-242)||(27398634-27398872)
chr6 (1-121)||(26048965-26049085)
chr6 (1-121)||(26070134-26070254)
chr6 (1-246)||(26656109-26656351)
chr6 (1-246)||(26762080-26762322)
chr6 (40-217)||(26823999-26824176)
chr6 (110-219)||(27214649-27214758)
chr6 (110-219)||(27234470-27234579)
chr6 (114-219)||(28786511-28786616)
chr6 (114-219)||(28792632-28792737)
chr6 (165-245)||(27679230-27679310)
chr6 (115-219)||(28781373-28781477)
chr6 (110-197)||(26848889-26848976)
chr6 (174-245)||(27677437-27677508)
chr6 (174-245)||(27706225-27706296)
chr6 (187-245)||(27592843-27592901)
chr6 (1-229)||(27718218-27718446)
chr6 (173-245)||(26802734-26802806)
chr6 (41-155)||(26949821-26949935)
chr6 (110-197)||(26975281-26975368)
chr6 (125-211)||(26617866-26617952)
chr6 (125-211)||(26723794-26723880)
chr6 (91-200)||(25506852-25506961)
chr6 (110-197)||(25071888-25071975)
chr6 (110-197)||(26959395-26959482)
chr6 (174-245)||(27698317-27698388)
chr6 (209-246)||(25511268-25511305)
chr6 (1-98)||(26623096-26623193)
chr6 (1-98)||(26729074-26729171)
chr6 (164-204)||(28098221-28098261)
chr6 (126-211)||(26811754-26811839)
chr6 (183-245)||(26861915-26861974)
chr6 (1-69)||(27427605-27427673)
chr6 (47-99)||(29826193-29826245)
[»] chr4 (6 HSPs)
chr4 (1-242)||(18731320-18731558)
chr4 (1-216)||(18699239-18699454)
chr4 (1-242)||(18723901-18724139)
chr4 (3-219)||(18655313-18655529)
chr4 (1-242)||(18679383-18679621)
chr4 (1-69)||(18073882-18073950)
[»] chr1 (3 HSPs)
chr1 (40-217)||(268195-268372)
chr1 (1-246)||(28127491-28127733)
chr1 (1-218)||(28164200-28164416)
[»] chr8 (1 HSPs)
chr8 (1-217)||(29273621-29273837)
[»] scaffold0419 (1 HSPs)
scaffold0419 (115-217)||(7759-7861)
[»] scaffold0277 (2 HSPs)
scaffold0277 (115-217)||(13483-13585)
scaffold0277 (1-217)||(4522-4738)
[»] chr2 (3 HSPs)
chr2 (110-197)||(17993555-17993642)
chr2 (164-204)||(3279986-3280026)
chr2 (47-98)||(3279857-3279908)
[»] scaffold0349 (2 HSPs)
scaffold0349 (173-229)||(3259-3315)
scaffold0349 (174-229)||(14195-14250)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-69)||(59690-59758)


Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 43)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 25579839 - 25580081
Alignment:
Q  1 cacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtg 100  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25579839 cacatcattcactgctacaagacaaagagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtg 25579938  T
Q  101 ggcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtc 200  Q
     | |||||||||||||||||||| |||| ||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  25579939 agtatcttactaagcatgaagagaggtttcaaaataacgagaaaaacatggagcgattgcgtcaatggaagatagctcttacccaagctgctaacttgtc 25580038  T
Q  201 cggctatcattatagtcctcatgggtaccccactttacttaaa 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  25580039 cggctatcattatagtcctcatgggtaccccactttacttaaa 25580081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 26056046 - 26056291
Alignment:
Q  1 cacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtg 100  Q
    |||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26056046 cacatcattcactgctacaacacaaagagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtg 26056145  T
Q  101 ggcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtc 200  Q
     |||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  26056146 agcatcttactaagcataaagaggggttccaaaataacgagaaaaacatggagcgattgcgtcaatggaagatggctcttactcaagctgctaacttgtc 26056245  T
Q  201 cggctatcattatagtcctcatgggtaccccactttacttaaatct 246  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||    
T  26056246 cggctatcattatagtcctcatgagtaccctactttacttaaatct 26056291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 26076016 - 26076261
Alignment:
Q  1 cacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtg 100  Q
    |||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26076016 cacatcattcactgctacaacacaaagagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtg 26076115  T
Q  101 ggcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtc 200  Q
     |||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  26076116 agcatcttactaagcataaagaggggttccaaaataacgagaaaaacatggagcgattgcgtcaatggaagatggctcttactcaagctgctaacttgtc 26076215  T
Q  201 cggctatcattatagtcctcatgggtaccccactttacttaaatct 246  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||    
T  26076216 cggctatcattatagtcctcatgagtaccctactttacttaaatct 26076261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 26142985 - 26143227
Alignment:
Q  1 cacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtg 100  Q
    ||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  26142985 cacatcattcactgctacaagacaaagagttgcttagtatttcccgttttctatgatgtggaacctactcacatacgaaatcagagtgggatttatggtg 26143084  T
Q  101 ggcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtc 200  Q
     |||||||||||||||||||||| |||| ||||||||| ||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||    
T  26143085 agcatcttactaagcatgaagagaggtttcaaaataacgagaaaaacatggagcgattgcgtcaatggaagatagctcttatccaagctgctaacttgtc 26143184  T
Q  201 cggctatcattatagtcctcatgggtaccccactttacttaaa 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  26143185 cggctatcattatagtcctcatgggtaccccactttacttaaa 26143227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 4 - 246
Target Start/End: Original strand, 25538663 - 25538905
Alignment:
Q  4 atcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgggc 103  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||    
T  25538663 atcattcactgctacaagacaaagagttgcttagtattgcccgttttctatgatgtggaacctactcagttacgacatcagagtgggagttatggtgagc 25538762  T
Q  104 atcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccgg 203  Q
    || ||||||||||||||||| |||| ||||||||  ||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||    
T  25538763 attttactaagcatgaagagaggtttcaaaataatgagaaaaacatggagcgattgcgtcaatggaagatagctcttatccaagctgctaacttgtccgg 25538862  T
Q  204 ctatcattatagtcctcatgggtaccccactttacttaaatct 246  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  25538863 ctatcattatagtcctcatgggtaccccactttacttaaatct 25538905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 25481862 - 25482104
Alignment:
Q  1 cacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtg 100  Q
    ||||||||||||||||||||||| | ||||||||||||||| ||||||||||||| |||||| |||||| |  | |||| ||| |   | ||||||||||    
T  25481862 cacatcattcactgctacaagacaaagagttgcttagtattacccgttttctatggtgtggatcctactgatgttcgacgtcatacatgtagttatggtg 25481961  T
Q  101 ggcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtc 200  Q
       |||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||    
T  25481962 aatatctgactaagcatgaagaggggttccaaaataacgagaaaaacatggagcgattgcgtcaatggaagatggctcttactcaagctgctaatttgtc 25482061  T
Q  201 cggctatcattatagtcctcatgggtaccccactttacttaaa 243  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  25482062 cggctatcattatagtcctcatgagtaccccactttacttaaa 25482104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 26646599 - 26646838
Alignment:
Q  1 cacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtg 100  Q
    ||||||||||| ||||||||||| | | || |  | || ||||||||||||||||  ||||| |||||||| ||||| ||||| ||||||||||||||||    
T  26646599 cacatcattcattgctacaagacaaagggtcgtctcgttttgcccgttttctatggcgtggatcctactcagatacggcatcaaagtgggagttatggtg 26646698  T
Q  101 ggcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtc 200  Q
      ||||| |||||||| |||||| | |||||||||||||||||||||| ||| ||| ||| |||||||||| ||||||| ||||||||||||||||||||    
T  26646699 aacatctcactaagcacgaagagagtttccaaaataacaagaaaaacaaggaacgattgcatcaatggaagttggctctgacccaagctgctaacttgtc 26646798  T
Q  201 cggctatcattatagtcctcatgggtaccccactttacttaaa 243  Q
    ||| || |||||||||||   ||||||||||||||||||||||    
T  26646799 cggataccattatagtcc---tgggtaccccactttacttaaa 26646838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 26752567 - 26752806
Alignment:
Q  1 cacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtg 100  Q
    ||||||||||| ||||||||||| | | || |  | || ||||||||||||||||  ||||| |||||||| ||||| ||||| ||||||||||||||||    
T  26752567 cacatcattcattgctacaagacaaagggtcgtctcgttttgcccgttttctatggcgtggatcctactcagatacggcatcaaagtgggagttatggtg 26752666  T
Q  101 ggcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtc 200  Q
      ||||| |||||||| |||||| | |||||||||||||||||||||| ||| ||| ||| |||||||||| ||||||| ||||||||||||||||||||    
T  26752667 aacatctcactaagcacgaagagagtttccaaaataacaagaaaaacaaggaacgattgcatcaatggaagttggctctgacccaagctgctaacttgtc 26752766  T
Q  201 cggctatcattatagtcctcatgggtaccccactttacttaaa 243  Q
    ||| || |||||||||||   ||||||||||||||||||||||    
T  26752767 cggataccattatagtcc---tgggtaccccactttacttaaa 26752806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 27338132 - 27337894
Alignment:
Q  1 cacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtg 100  Q
    ||||||||||||||||||||||| | | |||| |  || ||||| |||||||||| || ||| ||||||||| |||||||||||| ||||||||||||||    
T  27338132 cacatcattcactgctacaagacaaggggttgttcggttttgcctgttttctatggtgcggatcctactcacgtacgacatcagactgggagttatggtg 27338033  T
Q  101 ggcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtc 200  Q
     |||||||||||||||||||||   |||||||||||||||| ||||||||||| |  ||    |||||||||||||||||||||||||||||||||| ||    
T  27338032 agcatcttactaagcatgaagataagttccaaaataacaaggaaaacatggagaggttgaagaaatggaagatggctcttacccaagctgctaacttctc 27337933  T
Q  201 cggctatcattatagtcctcatgggtaccccactttacttaa 242  Q
    |||| | |||| |||   ||| ||||||||||||||||||||    
T  27337932 cggccaccattttag---tcaagggtaccccactttacttaa 27337894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 27398872 - 27398634
Alignment:
Q  1 cacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtg 100  Q
    ||||||||||||||||||||||| | | |||| |  || ||||| |||||||||| || ||| ||||||||| |||||||||||| ||||||||||||||    
T  27398872 cacatcattcactgctacaagacaaggggttgttcggttttgcctgttttctatggtgcggatcctactcacgtacgacatcagactgggagttatggtg 27398773  T
Q  101 ggcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtc 200  Q
     |||||||||||||||||||||   |||||||||||||||| ||||||||||| |  ||    |||||||||||||||||||||||||||||||||| ||    
T  27398772 agcatcttactaagcatgaagataagttccaaaataacaaggaaaacatggagaggttgaagaaatggaagatggctcttacccaagctgctaacttctc 27398673  T
Q  201 cggctatcattatagtcctcatgggtaccccactttacttaa 242  Q
    |||| | |||| |||   ||| ||||||||||||||||||||    
T  27398672 cggccaccattttag---tcaagggtaccccactttacttaa 27398634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 26048965 - 26049085
Alignment:
Q  1 cacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtg 100  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  26048965 cacatcattcactgctacaagacaaagagttgcttagtattgcccgttttttatgatgtggaacctactcacatacgacatcatagtggaagttatggtg 26049064  T
Q  101 ggcatcttactaagcatgaag 121  Q
     ||||||||||||||||||||    
T  26049065 agcatcttactaagcatgaag 26049085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 26070134 - 26070254
Alignment:
Q  1 cacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtg 100  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  26070134 cacatcattcactgctacaagacaaagagttgcttagtattgcccgttttttatgatgtggaacctactcacatacgacatcatagtggaagttatggtg 26070233  T
Q  101 ggcatcttactaagcatgaag 121  Q
     ||||||||||||||||||||    
T  26070234 agcatcttactaagcatgaag 26070254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 26656109 - 26656351
Alignment:
Q  1 cacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtg 100  Q
    ||||||||||| ||||| ||||| | | |||| |  || ||||| |||||||||| |||||| |||||||||||||||||||||| ||| ||||| ||||    
T  26656109 cacatcattcattgctataagacaaagggttgttcggttttgcctgttttctatggtgtggatcctactcacatacgacatcagactggaagttacggtg 26656208  T
Q  101 ggcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtc 200  Q
     ||||||||||||||||||| ||  |||||||||||||||| |||||||| || |  ||   ||||||||||||||||| ||| ||||||| ||||||||    
T  26656209 agcatcttactaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtc 26656308  T
Q  201 cggctatcattatagtcctcatgggtaccccactttacttaaatct 246  Q
     ||||| |||| |||   ||| ||||||||||||||||||||||||    
T  26656309 tggctaccattgtag---tcaagggtaccccactttacttaaatct 26656351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 26762080 - 26762322
Alignment:
Q  1 cacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtg 100  Q
    ||||||||||| ||||| ||||| | | |||| |  || ||||| |||||||||| |||||| |||||||||||||||||||||| ||| ||||| ||||    
T  26762080 cacatcattcattgctataagacaaagggttgttcggttttgcctgttttctatggtgtggatcctactcacatacgacatcagactggaagttacggtg 26762179  T
Q  101 ggcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtc 200  Q
     ||||||||||||||||||| ||  |||||||||||||||| |||||||| || |  ||   ||||||||||||||||| ||| ||||||| ||||||||    
T  26762180 agcatcttactaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtc 26762279  T
Q  201 cggctatcattatagtcctcatgggtaccccactttacttaaatct 246  Q
     ||||| |||| |||   ||| ||||||||||||||||||||||||    
T  26762280 tggctaccattgtag---tcaagggtaccccactttacttaaatct 26762322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 40 - 217
Target Start/End: Original strand, 26823999 - 26824176
Alignment:
Q  40 ttgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgggcatcttactaagcatgaagaggggttccaaaataaca 139  Q
    ||||| |||||||||| |||||| |||  | |||||||||||||| |||||||||||| |   ||||| |||||||||||| || |||||  ||||||||    
T  26823999 ttgcctgttttctatggtgtggatcctggtgacatacgacatcagcgtgggagttatgctatacatctcactaagcatgaaaagaggttcggaaataaca 26824098  T
Q  140 agaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcattatagtc 217  Q
    || |||||||||||  | ||| ||||||||||| |||||| |  ||||||||| ||||||| |||| ||||| |||||    
T  26824099 aggaaaacatggagaaattgcttcaatggaagaaggctctgaaacaagctgctgacttgtctggctttcattttagtc 26824176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 110 - 219
Target Start/End: Original strand, 27214649 - 27214758
Alignment:
Q  110 ctaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatca 209  Q
    |||||||||||||| |||| |||||||||||| |||||||||||||  |||   |||||||||| ||||||| ||||||||||||||| || ||||||||    
T  27214649 ctaagcatgaagagaggtttcaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaaccaagctgctaacttatctggctatca 27214748  T
Q  210 ttatagtcct 219  Q
    ||||||||||    
T  27214749 ttatagtcct 27214758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 110 - 219
Target Start/End: Complemental strand, 27234579 - 27234470
Alignment:
Q  110 ctaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatca 209  Q
    |||||||||||||| |||| |||||||||||| |||||||||||||  |||   |||||||||| ||||||| ||||||||||||||| || ||||||||    
T  27234579 ctaagcatgaagagaggtttcaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaaccaagctgctaacttatctggctatca 27234480  T
Q  210 ttatagtcct 219  Q
    ||||||||||    
T  27234479 ttatagtcct 27234470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 28786511 - 28786616
Alignment:
Q  114 gcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcattat 213  Q
    ||||||| || |||| |||||| | ||| | ||||||||| |  ||| |||||||||| ||||||| |||||||||||||||||||||||||| |||| |    
T  28786511 gcatgaaaagaggtttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattct 28786610  T
Q  214 agtcct 219  Q
    ||||||    
T  28786611 agtcct 28786616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 28792632 - 28792737
Alignment:
Q  114 gcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcattat 213  Q
    ||||||| || |||| |||||| | ||| | ||||||||| |  ||| |||||||||| ||||||| |||||||||||||||||||||||||| |||| |    
T  28792632 gcatgaaaagaggtttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattct 28792731  T
Q  214 agtcct 219  Q
    ||||||    
T  28792732 agtcct 28792737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 165 - 245
Target Start/End: Original strand, 27679230 - 27679310
Alignment:
Q  165 atggaagatggctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatc 245  Q
    |||||| | |||||| | ||| |||||||||||||||||||| ||| ||||||||| ||||||||| ||||||||||||||    
T  27679230 atggaaaaaggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatc 27679310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 115 - 219
Target Start/End: Original strand, 28781373 - 28781477
Alignment:
Q  115 catgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcattata 214  Q
    |||||| || |||| |||||| | ||| | ||||||||| |  ||| |||||||||| ||||||| |||||||||||||||||||||||||| |||| ||    
T  28781373 catgaaaagaggtttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattcta 28781472  T
Q  215 gtcct 219  Q
    |||||    
T  28781473 gtcct 28781477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 197
Target Start/End: Original strand, 26848889 - 26848976
Alignment:
Q  110 ctaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaactt 197  Q
    ||||||||||||||| ||| |||||||||||| ||| |||||||||  ||||| |||||||||  ||||||| ||| |||||||||||    
T  26848889 ctaagcatgaagaggtgtttcaaaataacaaggaaagcatggagcgtttgcgtaaatggaagaaagctcttaaccatgctgctaactt 26848976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 27677508 - 27677437
Alignment:
Q  174 ggctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatc 245  Q
    |||||| | ||| |||||||||||||||||||| ||| ||||||||| ||||||||| ||||||||||||||    
T  27677508 ggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatc 27677437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 27706296 - 27706225
Alignment:
Q  174 ggctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatc 245  Q
    |||||| | ||| |||||||||||||||||||| ||| ||||||||| ||||||||| ||||||||||||||    
T  27706296 ggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatc 27706225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 187 - 245
Target Start/End: Complemental strand, 27592901 - 27592843
Alignment:
Q  187 gctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatc 245  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||| ||||||||||||||    
T  27592901 gctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatc 27592843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 27718446 - 27718218
Alignment:
Q  1 cacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtg 100  Q
    ||||| ||||||||||||||||| | | || || | || ||||| |||||||  |  |||||||||||| || | ||||||||||  || ||||||||||    
T  27718446 cacataattcactgctacaagacaaagggtcgcctcgttttgcctgttttcttcggcgtggaacctactaacgtgcgacatcagaaaggtagttatggtg 27718347  T
Q  101 g-gcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgt 199  Q
      |||| |  || |||||||| || |||| |||||| | ||||| ||||||||| |  |||  | ||||||  ||||||| | ||| |||||||||||||    
T  27718346 aagcat-tggctgagcatgaaaagaggtttcaaaatgataagaataacatggagaggttgcagcgatggaaagtggctctgagccaggctgctaacttgt 27718248  T
Q  200 ccggctatcattatagtcctcatgggtacc 229  Q
    ||||||| ||| ||||||||| ||||||||    
T  27718247 ccggctaccatgatagtcctcctgggtacc 27718218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 26802734 - 26802806
Alignment:
Q  173 tggctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatc 245  Q
    ||||||| | ||| |||||||||||||||||||| ||| ||||||||| | ||||||| ||||||||||||||    
T  26802734 tggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctcggtacccaactttacttaaatc 26802806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 155
Target Start/End: Original strand, 26949821 - 26949935
Alignment:
Q  41 tgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgg-gcatcttactaagcatgaagaggggttccaaaataaca 139  Q
    |||| |||||||||||||| |||||| ||||| | |||||||||| |   ||||||||||  ||| ||| |||||||||||||| |||||||||| | ||    
T  26949821 tgccagttttctatgatgtagaaccttctcacgtgcgacatcagaattatagttatggtgaagca-cttgctaagcatgaagagaggttccaaaagagca 26949919  T
Q  140 agaaaaacatggagcg 155  Q
    | ||||||||||||||    
T  26949920 aaaaaaacatggagcg 26949935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 197
Target Start/End: Original strand, 26975281 - 26975368
Alignment:
Q  110 ctaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaactt 197  Q
    ||||||||||||||||||| |||||||| ||  ||||| |||||||  ||| | |||||||||  ||||||| |||||||||||||||    
T  26975281 ctaagcatgaagaggggtttcaaaataaaaatgaaaacttggagcggttgcttaaatggaagaaagctcttaaccaagctgctaactt 26975368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 211
Target Start/End: Original strand, 26617866 - 26617952
Alignment:
Q  125 ggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcatt 211  Q
    ||||||||||||||||| |||||||||||||  |||   |||||||||| ||||||| |||||||  |||||| || ||||||||||    
T  26617866 ggttccaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaaccaagcttataacttatctggctatcatt 26617952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 211
Target Start/End: Original strand, 26723794 - 26723880
Alignment:
Q  125 ggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcatt 211  Q
    ||||||||||||||||| |||||||||||||  |||   |||||||||| ||||||| |||||||  |||||| || ||||||||||    
T  26723794 ggttccaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaaccaagcttataacttatctggctatcatt 26723880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 200
Target Start/End: Complemental strand, 25506961 - 25506852
Alignment:
Q  91 agttatggtgggcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctg 190  Q
    ||||||||||   |||| |||||||||||||||  ||| |||||||| ||||||||||||||| ||  || ||||||||| || ||||| || ||| |||    
T  25506961 agttatggtgaagatctgactaagcatgaagagaagtttcaaaataataagaaaaacatggagagatcgcatcaatggaaaatagctctaacacaatctg 25506862  T
Q  191 ctaacttgtc 200  Q
    ||||| ||||    
T  25506861 ctaacctgtc 25506852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 197
Target Start/End: Original strand, 25071888 - 25071975
Alignment:
Q  110 ctaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaactt 197  Q
    ||||||||||||||||||| |||||||||||| || ||||||||||  |||    ||||||||  ||||||| | |||||||||||||    
T  25071888 ctaagcatgaagaggggtttcaaaataacaaggaacacatggagcggttgctgacatggaagaaagctcttaacgaagctgctaactt 25071975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 197
Target Start/End: Original strand, 26959395 - 26959482
Alignment:
Q  110 ctaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaactt 197  Q
    ||||||||||||||  ||| ||||||| |||| |||||||||||||  |||   |||||||||  ||||||| |||||||||||||||    
T  26959395 ctaagcatgaagagcagtttcaaaatagcaaggaaaacatggagcggttgctgaaatggaagaaagctcttaaccaagctgctaactt 26959482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 27698388 - 27698317
Alignment:
Q  174 ggctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatc 245  Q
    |||||| | ||| |||||||||||||||||||| ||| |||||||||   ||||||| ||||||||||||||    
T  27698388 ggctctgagccaggctgctaacttgtccggctaccatgatagtcctcccaggtacccaactttacttaaatc 27698317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 25511268 - 25511305
Alignment:
Q  209 attatagtcctcatgggtaccccactttacttaaatct 246  Q
    |||||||||||||||||||||| |||||||||||||||    
T  25511268 attatagtcctcatgggtaccctactttacttaaatct 25511305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 26623096 - 26623193
Alignment:
Q  1 cacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatgg 98  Q
    |||||||||||||||||||| || | | || |  | || |||||||| |||||||  ||||| |||||||||||||| ||||| | ||||||||||||    
T  26623096 cacatcattcactgctacaaaacaaagggtcgtctcgttttgcccgtcttctatggcgtggatcctactcacatacggcatcaaactgggagttatgg 26623193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 26729074 - 26729171
Alignment:
Q  1 cacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatgg 98  Q
    |||||||||||||||||||| || | | || |  | || |||||||| |||||||  ||||| |||||||||||||| ||||| | ||||||||||||    
T  26729074 cacatcattcactgctacaaaacaaagggtcgtctcgttttgcccgtcttctatggcgtggatcctactcacatacggcatcaaactgggagttatgg 26729171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 28098261 - 28098221
Alignment:
Q  164 aatggaagatggctcttacccaagctgctaacttgtccggc 204  Q
    |||||||||||||||||| |||||| |||||||||||||||    
T  28098261 aatggaagatggctcttaaccaagcagctaacttgtccggc 28098221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 211
Target Start/End: Original strand, 26811754 - 26811839
Alignment:
Q  126 gttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcatt 211  Q
    |||||||||||||||| |||||||||| ||  |||   |||||||||| ||||||| ||||| || |||||| || |||| |||||    
T  26811754 gttccaaaataacaaggaaaacatggatcggttgcagaaatggaagatagctcttaaccaagttggtaacttatctggctttcatt 26811839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 245
Target Start/End: Original strand, 26861915 - 26861974
Alignment:
Q  183 ccaagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatc 245  Q
    |||||||||||||||||| ||||| |||| ||||||   |||||||||||||| || ||||||    
T  26861915 ccaagctgctaacttgtcaggctaccattttagtcc---tgggtaccccacttaacataaatc 26861974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 27427673 - 27427605
Alignment:
Q  1 cacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctact 69  Q
    |||||||||||||||||||| || | | ||||| | || ||||| ||||||| || |||||||||||||    
T  27427673 cacatcattcactgctacaaaaccaagggttgcctcgttttgcctgttttctttggtgtggaacctact 27427605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 29826193 - 29826245
Alignment:
Q  47 ttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggt 99  Q
    |||||||||||||||| ||| ||||  | |||||||||| |||||||||||||    
T  29826193 ttttctatgatgtggatccttctcatgtgcgacatcagactgggagttatggt 29826245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 18731558 - 18731320
Alignment:
Q  1 cacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtg 100  Q
    |||||||| |||||||||||||| | | || |  | || ||||| ||||||||||  ||||| |||| ||||||||||||||| ||||||||||||||||    
T  18731558 cacatcatgcactgctacaagacaaagggtcgtcttgttttgcctgttttctatggcgtggatcctagtcacatacgacatcaaagtgggagttatggtg 18731459  T
Q  101 ggcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtc 200  Q
      ||||| ||||||||  || || | |||||||||||||||||||||||||||||  ||| |||||||||| ||||||| ||| ||||||||||||||||    
T  18731458 aacatctcactaagcacaaaaagagtttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttggctctgaccgaagctgctaacttgtc 18731359  T
Q  201 cggctatcattatagtcctcatgggtaccccactttacttaa 242  Q
    |||||| |||| |||   |||||||||| || ||||||||||    
T  18731358 cggctaccattttag---tcatgggtactcctctttacttaa 18731320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 18699454 - 18699239
Alignment:
Q  1 cacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtg 100  Q
    ||||||||||||||||||||||| |   || |  | || ||||| ||||||||||  || || |||||||||||||||||||| ||||||||||||||||    
T  18699454 cacatcattcactgctacaagacaaaaggtcgtctcgttttgcctgttttctatggcgtagatcctactcacatacgacatcaaagtgggagttatggtg 18699355  T
Q  101 ggcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtc 200  Q
      ||||| |||||||| | | || | |||||||||||||||||||||||||||||  ||| |||||||||| | ||||| ||| ||||||||||||||||    
T  18699354 aacatctcactaagcacggaaagagtttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccgaagctgctaacttgtc 18699255  T
Q  201 cggctatcattatagt 216  Q
    |||||| |||| ||||    
T  18699254 cggctaccattttagt 18699239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 18724139 - 18723901
Alignment:
Q  1 cacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtg 100  Q
    |||||||| |||||||||||||| | | || |  | || ||||| ||||||||||  ||||| |||| |||||||||||| || ||||||||||||||||    
T  18724139 cacatcatgcactgctacaagacaaagggtcgtcttgttttgcctgttttctatggcgtggatcctagtcacatacgacaccaaagtgggagttatggtg 18724040  T
Q  101 ggcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtc 200  Q
      ||||| ||||||||  ||  | | |||||||||||||||||||||||||||||  ||| |||||||||| ||||||| ||| ||||||||||||||||    
T  18724039 aacatctcactaagcacaaaatgagtttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttggctctgaccgaagctgctaacttgtc 18723940  T
Q  201 cggctatcattatagtcctcatgggtaccccactttacttaa 242  Q
    |||||| |||| ||||||   ||||||| || ||||||||||    
T  18723939 cggctaccattttagtcc---tgggtactcctctttacttaa 18723901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 219
Target Start/End: Complemental strand, 18655529 - 18655313
Alignment:
Q  3 catcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtggg 102  Q
    ||||||||||||||||||||| | | || |  | || || || ||||||||||  ||||| |||||||||||||||||||| | ||| ||||||||||      
T  18655529 catcattcactgctacaagacaaagggtcgtctcgtttttcctgttttctatggcgtggatcctactcacatacgacatcaaactggaagttatggtgaa 18655430  T
Q  103 catcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccg 202  Q
    ||||| ||||||||   | ||   |||||||||||||||||||||||||||||  ||| |||||||||| ||||||| ||| ||||||||||||||||||    
T  18655429 catctcactaagcacagaaagaatttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttggctctgaccgaagctgctaacttgtccg 18655330  T
Q  203 gctatcattatagtcct 219  Q
    |||| |||| |||||||    
T  18655329 gctaccattctagtcct 18655313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 18679621 - 18679383
Alignment:
Q  1 cacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtg 100  Q
    ||||||||||||||||||||||| | | || |  | || ||||| ||||||||||  ||||| |||||||||||| ||||||| ||||| ||||||||||    
T  18679621 cacatcattcactgctacaagacaaagggtcgtcttgttttgcctgttttctatgtcgtggatcctactcacatatgacatcaaagtggtagttatggtg 18679522  T
Q  101 ggcatcttactaagca-tgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgt 199  Q
      ||||| ||||| || |||| || | |||||||||||||| ||||||||||||||  ||| |||||||||| | ||||| ||| |||||||||||||||    
T  18679521 aacatctcactaatcactgaa-agagtttccaaaataacaataaaaacatggagcggttgcatcaatggaagttagctctgaccgaagctgctaacttgt 18679423  T
Q  200 ccggctatcattatagtcctcatgggtaccccactttacttaa 242  Q
    ||||||| |||| ||||||   ||||||| || ||||||||||    
T  18679422 ccggctaccattttagtcc---tgggtactcctctttacttaa 18679383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 18073882 - 18073950
Alignment:
Q  1 cacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctact 69  Q
    |||||||||||||||||||| || | | ||||| | || ||||| ||||||| || |||||||||||||    
T  18073882 cacatcattcactgctacaaaaccaagggttgcctcgttttgcctgttttctttggtgtggaacctact 18073950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 40 - 217
Target Start/End: Complemental strand, 268372 - 268195
Alignment:
Q  40 ttgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgggcatcttactaagcatgaagaggggttccaaaataaca 139  Q
    |||||||| |||||||  ||||| |||||||||||||||||||| ||||||||||||||||  ||||| |||||||| |||||| | |||||||||| ||    
T  268372 ttgcccgtcttctatggcgtggatcctactcacatacgacatcaaagtgggagttatggtgaacatctcactaagcacgaagagagtttccaaaatagca 268273  T
Q  140 agaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcattatagtc 217  Q
    ||||||||||||||||  ||| |||||||||| ||||||| ||||||||| |||||||||| ||||| |||| |||||    
T  268272 agaaaaacatggagcggttgcatcaatggaagttggctctgacccaagcttctaacttgtctggctaccattctagtc 268195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 28127733 - 28127491
Alignment:
Q  1 cacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtg 100  Q
    ||||||||||||||||||||||| | | || || |||| ||||| ||||||| ||  ||||| |||||| |  | ||| |||| |  |||||||||||||    
T  28127733 cacatcattcactgctacaagacaaagggtcgcctagttttgcctgttttctttggcgtggatcctactgatgtgcgatatcatacagggagttatggtg 28127634  T
Q  101 ggcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtc 200  Q
       | ||| ||||||||| |||| |||||||||||||||||||||||||||||||| |||  ||||||||||| ||||| ||||||||||||||||||||    
T  28127633 aagagcttgctaagcatggagagaggttccaaaataacaagaaaaacatggagcgattgcaccaatggaagatagctctaacccaagctgctaacttgtc 28127534  T
Q  201 cggctatcattatagtcctcatgggtaccccactttacttaaatct 246  Q
    |||||| |||||||||||    |||||||| ||| |||||||||||    
T  28127533 cggctaccattatagtcc---agggtaccctactatacttaaatct 28127491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 28164416 - 28164200
Alignment:
Q  1 cacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtg 100  Q
    ||||||||||||||||||||||| | | || || |||| ||||| ||||||| ||  ||||| |||||| |  | |||||||| |  |||||||||||      
T  28164416 cacatcattcactgctacaagacaaagggtcgcctagttttgcctgttttct-tggcgtggatcctactgatgtgcgacatcatacagggagttatggca 28164318  T
Q  101 ggcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtc 200  Q
       |||||||||||||||  ||| |||||||||||||||||||||||||||||||| |||  ||||||||||| ||||| ||||||||||||||||||||    
T  28164317 aagatcttactaagcatggtgagaggttccaaaataacaagaaaaacatggagcgattgcaccaatggaagatagctctaacccaagctgctaacttgtc 28164218  T
Q  201 cggctatcattatagtcc 218  Q
    |||||| |||||||||||    
T  28164217 cggctaccattatagtcc 28164200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 29273837 - 29273621
Alignment:
Q  1 cacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtg 100  Q
    ||||||||||||||||||||||| | | || |  |  | ||||| || |||||||  ||||| |||||||||||||||||||| ||||||||||||||||    
T  29273837 cacatcattcactgctacaagacaaagggtcgtctcattttgcctgtcttctatggcgtggatcctactcacatacgacatcaaagtgggagttatggtg 29273738  T
Q  101 ggcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtc 200  Q
      ||||| |||||| | |||||| | |||||||||| ||||||||||||||| ||  ||| |||||||||| ||||||| ||||||||| ||||||||||    
T  29273737 aacatctcactaagtacgaagagagtttccaaaatagcaagaaaaacatggatcggttgcatcaatggaagttggctctgacccaagcttctaacttgtc 29273638  T
Q  201 cggctatcattatagtc 217  Q
     ||||| |||| |||||    
T  29273637 tggctaccattctagtc 29273621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 217
Target Start/End: Original strand, 7759 - 7861
Alignment:
Q  115 catgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcattata 214  Q
    |||||| || |||| |||||| | ||||| |||||||||||| ||| |||||||||| ||||||| |||||||||||||||||||||||||| |||| ||    
T  7759 catgaaaagaggtttcaaaatgataagaataacatggagcgattgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattcta 7858  T
Q  215 gtc 217  Q
    |||    
T  7859 gtc 7861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 217
Target Start/End: Complemental strand, 13585 - 13483
Alignment:
Q  115 catgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcattata 214  Q
    |||||| || |||| |||||| | ||||| |||||||||||| ||| |||||||||| ||||||| |||||||||||||||||||||||||| |||| ||    
T  13585 catgaaaagaggtttcaaaatgataagaataacatggagcgattgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattcta 13486  T
Q  215 gtc 217  Q
    |||    
T  13485 gtc 13483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 4738 - 4522
Alignment:
Q  1 cacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtg 100  Q
    ||||| ||||||||||||||||| | | || || | || ||||| |||||||  |  |||||||||||| || | ||||||| ||  || ||||||||||    
T  4738 cacataattcactgctacaagacaaagggtcgcctcgttttgcctgttttcttcggcgtggaacctactaacgtgcgacatctgaaaggtagttatggtg 4639  T
Q  101 g-gcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgt 199  Q
      |||| |  || |||||||| || |||| |||||| | ||||| ||||||||| |  ||| |||||||||| ||||||| |||||||||||||||||||    
T  4638 aagcat-tggctgagcatgaaaagaggtttcaaaatgataagaataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgt 4540  T
Q  200 ccggctatcattatagtc 217  Q
    ||||||| |||| |||||    
T  4539 ccggctaccattctagtc 4522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 197
Target Start/End: Complemental strand, 17993642 - 17993555
Alignment:
Q  110 ctaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaactt 197  Q
    |||||||||||||||| || ||||||| |||| |||||||||||||  ||    |||||||||  ||||||| |||||||||||||||    
T  17993642 ctaagcatgaagagggttttcaaaatagcaaggaaaacatggagcggttgttgaaatggaagaaagctcttaaccaagctgctaactt 17993555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 3279986 - 3280026
Alignment:
Q  164 aatggaagatggctcttacccaagctgctaacttgtccggc 204  Q
    |||||||||||||||||| |||||| |||||||||||||||    
T  3279986 aatggaagatggctcttaaccaagcagctaacttgtccggc 3280026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 98
Target Start/End: Original strand, 3279857 - 3279908
Alignment:
Q  47 ttttctatgatgtggaacctactcacatacgacatcagagtgggagttatgg 98  Q
    |||||||||||||||||||| | ||| | |||||||||| ||||||||||||    
T  3279857 ttttctatgatgtggaaccttcccacgtgcgacatcagactgggagttatgg 3279908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 3315 - 3259
Alignment:
Q  173 tggctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtacc 229  Q
    ||||||| | ||| |||||||||||||||||||| ||| ||||||||| ||||||||    
T  3315 tggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacc 3259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 14250 - 14195
Alignment:
Q  174 ggctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtacc 229  Q
    |||||| | ||| |||||||||||||||||||| ||| ||||||||| ||||||||    
T  14250 ggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacc 14195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 59690 - 59758
Alignment:
Q  1 cacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctact 69  Q
    |||||||||||||||||||| || | | ||||| | || ||||| ||||||| || |||||||||||||    
T  59690 cacatcattcactgctacaaaaccaagggttgcctcgttttgcctgttttctttggtgtggaacctact 59758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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