View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_149 (Length: 245)
Name: NF3820_low_149
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_149 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 6188259 - 6188030
Alignment:
| Q |
1 |
atgaaaaatatcatattaatgagatgttagttttttacaactatataaattctagacaattccgcaagttatgttacggggaatttggaaagggaaatat |
100 |
Q |
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| T |
6188259 |
atgaaaaatatcatattaatgagatgttagttttttacaactata--aattctagacaattctgcaagttatgttacggggaatttggaaagggaaatat |
6188162 |
T |
|
| Q |
101 |
ttgacggacacttataaaggtgtatacattttaagagagaaagaaataaagagaatgatctgattggaagagagaggtaaggtgaaattctagtgtttaa |
200 |
Q |
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| T |
6188161 |
ttgacggacacttgtaaaggtgtatacattttaagagagaaagagataaagagaatgatgtgattggaagagagaggtaaggtgaaattctagtgtttga |
6188062 |
T |
|
| Q |
201 |
aaat-aagggttacaagtatcattgttggttt |
231 |
Q |
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|||| |||| ||||||||| |||||||||||| |
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| T |
6188061 |
aaataaaggattacaagtagcattgttggttt |
6188030 |
T |
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