View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_158 (Length: 239)
Name: NF3820_low_158
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_158 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 43504589 - 43504366
Alignment:
| Q |
1 |
atatattgctgaagtgtctcaaaacatgttacaagcatgaatgatgtagcattctgacttcagttataaacagatgctgcgacatatgtgaaggttctgt |
100 |
Q |
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| T |
43504589 |
atatattgctgaagtgtctcaaaacatgttacaagcatgaatgatgtagcattctgacttcagttataaacagatgctgcgacatatgtgaaggttctgt |
43504490 |
T |
|
| Q |
101 |
tacaatttgttataattttcttacagtttgttaatcagctaattgtcataactgatttaacagaatcatattttgtagacttgttagcttattttcatgt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43504489 |
tacaatttgttataattttcttacagtttgttaatcagctaattgtcataactgatttaacagaatcatattttgtagacttgttagcttattttcatgt |
43504390 |
T |
|
| Q |
201 |
ttatataaatagcatatagtatct |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
43504389 |
ttatataaatagcatatagtatct |
43504366 |
T |
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