View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_162 (Length: 237)
Name: NF3820_low_162
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_162 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 872812 - 872574
Alignment:
| Q |
1 |
actgaaaatgtaaatcgtagcatgcagactccaaagttccta-gatg-----------------taaagtaagatcaatcctataatgcctttgaataaa |
82 |
Q |
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| T |
872812 |
actgaaaatgtaaatcgtagcatgcagactccaaagttcctatgatgcctatgatgcctttgaataaactaagatcaatcctatgatgcctttgaataaa |
872713 |
T |
|
| Q |
83 |
ctcaaaaaactgtgaaatcaagaattttgaagaatattataatgaaaaaatgacagacaaaaattatattttacaaatcaaaattattactagttttgtg |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
872712 |
ctcaaaaaactgtgaaatcaagaattttgaagaatattataatgaaaaaatgacagacaaaaattatattttacaaatcaaaattattactagtttcgtg |
872613 |
T |
|
| Q |
183 |
gtatatttatcacaaaatcttctgatttgaagaattcat |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
872612 |
gtatatttatcacaaaatcttctgatttgaagaattcat |
872574 |
T |
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