View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_17 (Length: 540)
Name: NF3820_low_17
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 11 - 523
Target Start/End: Original strand, 5437725 - 5438218
Alignment:
| Q |
11 |
atcatcacaacagtaaagacataaggcatccatcctatggtacaaatccaaacacaaataacatgaaagaagcaaaagtattctatgttgaactcaaatt |
110 |
Q |
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| T |
5437725 |
atcatcacaacagtaaagacataaggcatccatcctatggtacaaatccgaacacaaataacatgaaagaagcaaaagtattc----------------- |
5437807 |
T |
|
| Q |
111 |
tcagaaacatgaatgtattggtagaagatgaaaataaacagattcagaataacaaagaaaataaaagaaacaatgctagaaattgcagattctgttatac |
210 |
Q |
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| T |
5437808 |
--agaaacatgaatgtatcggtagaagatgaaaataaacagattcagaataacaaagaaaataaaagaaacaacactagaaattgcagattctgttatac |
5437905 |
T |
|
| Q |
211 |
tcggatatatggctatcccacaaagtgccccctccctattcgtaaccgcctcccttcttcccacttttccagtaccccactcaatttccactcagcataa |
310 |
Q |
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| T |
5437906 |
tcggatatatggctatcccacaaagtgccccctccctattcgtaaccgcctcccttcttcccacttttccagtaccccactcaatttccactcagcataa |
5438005 |
T |
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| Q |
311 |
caatctcatcccctaagtctcctcagatttagattccctacggtcggaaaattcaaagtcaaacaatctaaaccgtctaatgctcacattccgactttgt |
410 |
Q |
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| T |
5438006 |
caatctcatcccctaagtctcctcagatttagattccctacggtcggaaaattcaaagtcaaacaatctaaactgtccaatgctcacattccgactttgt |
5438105 |
T |
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| Q |
411 |
aaattgatttcaaagaccaagtcagaacgtgaatcatacaatctttatgtaatgattttgattgtgtggttgtggaaaatacataattccttgactacag |
510 |
Q |
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| T |
5438106 |
aaattgatttcaaaaaccaagtcagaacgtgaatcatacaatctttatgtaatgattttgattgtgtgattgtggaaaatacataattccttgactacag |
5438205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 204 - 476
Target Start/End: Original strand, 5430540 - 5430815
Alignment:
| Q |
204 |
gttatactcggatatatggctatcccacaaag---tgccccctccctattcgtaaccgcctcccttcttcccacttttccagtaccccactcaatttcca |
300 |
Q |
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|||| |||||||| | |||||||||||||||| || ||||| ||||||| |||| ||||||||| ||||| |||||| | ||||||||||||| | |
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| T |
5430540 |
gttaaactcggatttctggctatcccacaaagatgtgtccccttcctattcttaacgacctcccttcatcccatttttcctggtgcccactcaatttcta |
5430639 |
T |
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| Q |
301 |
ctcagcataacaatctcatcccctaagtctcctcagatttagattccctacggtcggaaaattcaaagtcaaacaatctaaaccgtctaatgctcacatt |
400 |
Q |
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| T |
5430640 |
cttagcataaccatcccaccccctaagtctcatcggatttggattccatatggtctggaaatccgaagttaagcaatccaaaccgtctaatactcacgtc |
5430739 |
T |
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| Q |
401 |
ccgactttgtaaattgatttcaaagaccaagtcagaacgtgaatcatacaatctttatgtaatgattttgattgtg |
476 |
Q |
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| T |
5430740 |
ctgacattgtaaattgatttcaaataccaagtccgcacgtgaatcatccaatctttatctaatgattttgactgtg |
5430815 |
T |
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