View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_170 (Length: 229)
Name: NF3820_low_170
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_170 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 229
Target Start/End: Original strand, 43180379 - 43180602
Alignment:
| Q |
8 |
agccaaaaccctctgtgataatctcaaagaagataacgaagaaaaggttttatagagatgaagaatgctgttaatggatgaaaattacatagcagattgt |
107 |
Q |
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| T |
43180379 |
agccaaaaccctctgtgataatctcaaagaagataacgaagaaaaggttttatagagatgaagaatgctgctaatggatgaaaattacatagcagattgt |
43180478 |
T |
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| Q |
108 |
aaagtgtgcacaccattcattcatatatacacttaacaaaccaaggaacctcactttgcaattcaggggtaatcaagtatatttggttttttaaattgc- |
206 |
Q |
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| T |
43180479 |
aaagtgtgcacaccattcattcatatatacacttaacaaaccaaggaacctcactttgcaattcaggggtaatcaagtatatttggttttttaaattgca |
43180578 |
T |
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| Q |
207 |
-tttacatacactttttctgtcct |
229 |
Q |
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| T |
43180579 |
atttacatacactttttctgtcct |
43180602 |
T |
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Back To:
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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 130 - 203
Target Start/End: Complemental strand, 51863275 - 51863202
Alignment:
| Q |
130 |
atatatacacttaacaaaccaaggaacctcactttgcaattcaggggtaatcaagtatatttggttttttaaat |
203 |
Q |
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||||||| || ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||| |
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| T |
51863275 |
atatatatacataacaaaccaaggaacctcactttgcaattcagggataatgaagtatatttggtttgttaaat |
51863202 |
T |
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