View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_171 (Length: 227)
Name: NF3820_low_171
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_171 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 13396381 - 13396158
Alignment:
| Q |
1 |
accacaagggatattgttaattagcaccataaggttatctttgtgaagttatgacttatgagtgatgaagaaaaagatagtgccaatgttttatgacaaa |
100 |
Q |
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| T |
13396381 |
accacaagggatattgttaattagcaccataaggttatctttgtgaagttatgacttatgagtgatgaagaaaaagatagtgccaatgttttatgacaaa |
13396282 |
T |
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| Q |
101 |
gcaaatacgtttacattataacttttcactcataaagttgagtgtgcctttcaattaattctgtttttctaatcccaagtattaac-nnnnnnnnggtaa |
199 |
Q |
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| T |
13396281 |
gcaaatacgtttacattataacttttcactcataaagttgagtgtgcctttcaattaattctgtttttctaatcccaagtattaacaaaaaaaaaggtaa |
13396182 |
T |
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| Q |
200 |
agtagtttttgcataagatagtac |
223 |
Q |
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| T |
13396181 |
agtagtttttgcataagatagtac |
13396158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 49 - 182
Target Start/End: Complemental strand, 13393352 - 13393218
Alignment:
| Q |
49 |
ttatgacttatgagtgatgaagaaaaagatagtgccaatgttttatgacaaagcaaatacgtttacattataac-ttttcactcataaagttgagtgtgc |
147 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||| || || ||||||||| ||||||||||||| |
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| T |
13393352 |
ttatgacttatgagtgatgaagaaaaagatagtgctaatgttttatgacaaagcaaacacgtgtacatgatgacactttcactcacaaagttgagtgtgt |
13393253 |
T |
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| Q |
148 |
ctttcaattaattctgtttttctaatcccaagtat |
182 |
Q |
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| T |
13393252 |
ctttcagttaattcagttattttactcacaagtat |
13393218 |
T |
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