View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_172 (Length: 223)
Name: NF3820_low_172
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_172 |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 40 - 210
Target Start/End: Original strand, 6497990 - 6498160
Alignment:
| Q |
40 |
ctttggtgttctgtattctcagttttaccaatgcacctattaagtaaatacacagacccattaatttctttatgaaaggaacactaacccattgatattc |
139 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6497990 |
ctttagtgttctgtattctcagttttaccaatgcacctattaagtaaatacacagacccattaatttctttttgaaaggaacactaacccattgatattc |
6498089 |
T |
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| Q |
140 |
aaacatcttcatattaaaaacgtggcactacaagtgtgaggcaattgtatttattctacccattccctttg |
210 |
Q |
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| T |
6498090 |
aaacatcttcatattaaaaacgtgacactacaagtgtgaggcaactgtatttattctacccattccttttg |
6498160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 40 - 210
Target Start/End: Original strand, 31732999 - 31733169
Alignment:
| Q |
40 |
ctttggtgttctgtattctcagttttaccaatgcacctattaagtaaatacacagacccattaatttctttatgaaaggaacactaacccattgatattc |
139 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31732999 |
ctttagtgttctgtattctcagttttaccaatacacctattaagtaaatacatagacccattaatttctttttgaaaggaacactaacccattgatattc |
31733098 |
T |
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| Q |
140 |
aaacatcttcatattaaaaacgtggcactacaagtgtgaggcaattgtatttattctacccattccctttg |
210 |
Q |
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| T |
31733099 |
aaacatcttcatattaaaaacgtgacactacaagtgtgaggcaactgtatttattctacccattccttttg |
31733169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 40 - 210
Target Start/End: Original strand, 31735677 - 31735849
Alignment:
| Q |
40 |
ctttggtgttctgtattctcagttttaccaatgcacctattaagtaaatacacagacccattaatttctttatgaaaggaacactaacccattgatattc |
139 |
Q |
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|||| ||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
31735677 |
ctttagtgttctttattctcagttttaccaatgtacttattaagtaaatacacagacccattaatttctttttgaaaggaacactaacccatcgatattc |
31735776 |
T |
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| Q |
140 |
aaaca-tcttcatattaaaaacgtggcactacaa-gtgtgaggcaattgtatttattctacccattccctttg |
210 |
Q |
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||||| | ||| ||| |||||| || |||| ||| || |||||||||||| |||||||||| |||||| |||| |
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| T |
31735777 |
aaacatttttcgtataaaaaacatgacactgcaacgtctgaggcaattgtttttattctactcattccttttg |
31735849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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