View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3820_low_173 (Length: 223)

Name: NF3820_low_173
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3820_low_173
NF3820_low_173
[»] chr2 (1 HSPs)
chr2 (18-208)||(20040081-20040267)
[»] chr5 (2 HSPs)
chr5 (114-202)||(39087406-39087496)
chr5 (18-66)||(39087329-39087377)
[»] chr8 (2 HSPs)
chr8 (119-199)||(38544236-38544318)
chr8 (134-203)||(2320142-2320211)
[»] chr6 (1 HSPs)
chr6 (119-203)||(18246229-18246315)
[»] chr4 (1 HSPs)
chr4 (119-203)||(16990509-16990595)
[»] chr3 (4 HSPs)
chr3 (119-203)||(37242005-37242091)
chr3 (119-203)||(1258717-1258803)
chr3 (163-203)||(13809979-13810019)
chr3 (134-192)||(34873626-34873684)
[»] chr7 (1 HSPs)
chr7 (119-203)||(31234168-31234254)


Alignment Details
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 20040081 - 20040267
Alignment:
Q  18 aatgggtgtgaggttgaagataatatttgaattaataatgagtttgtagctgtacaaagagctaaaggtgatggcgatgcgcgcaacagttgtagatgat 117  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    | ||||||||||||||    
T  20040081 aatgggtttgaggttgaagataatatttgaattaataatgagtttgtagctgtacaaagagctaaaggtggtggcgatgc----agcagttgtagatgat 20040176  T
Q  118 tagaaaagtttggagagaagccattaagattaggtgtgggagaacatgataagatttaatagaagtgcacaatctaaccatttatcctatg 208  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20040177 gagaaaagtttggagagaagccattaagattaggtgtgggagaacatgataagatttaatagaagtgcacaatctaaccatttatcctatg 20040267  T

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Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 39087406 - 39087496
Alignment:
Q  114 tgattagaaaagtttgga--gagaagccattaagattaggtgtgggagaacatgataagatttaatagaagtgcacaatctaaccatttat 202  Q
    |||| |||||||||||||  ||||||| ||||||||||||||||||||||||||||||| ||| |||||| |||| |||||||||||||||    
T  39087406 tgatgagaaaagtttggaaagagaagcaattaagattaggtgtgggagaacatgataaggttttatagaaatgcaaaatctaaccatttat 39087496  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 39087329 - 39087377
Alignment:
Q  18 aatgggtgtgaggttgaagataatatttgaattaataatgagtttgtag 66  Q
    ||||||| ||||||||| ||||| ||||||||||| |||| ||||||||    
T  39087329 aatgggtttgaggttgatgataagatttgaattaaaaatgggtttgtag 39087377  T

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Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 199
Target Start/End: Original strand, 38544236 - 38544318
Alignment:
Q  119 agaaaagtttgga--gagaagccattaagattaggtgtgggagaacatgataagatttaatagaagtgcacaatctaaccatt 199  Q
    |||||||||||||  ||||| ||||||  |||||||||| |||| ||||||||||||||||||||||| ||||||||||||||    
T  38544236 agaaaagtttggaatgagaaaccattagaattaggtgtgagagagcatgataagatttaatagaagtgtacaatctaaccatt 38544318  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 134 - 203
Target Start/End: Original strand, 2320142 - 2320211
Alignment:
Q  134 gaagccattaagattaggtgtgggagaacatgataagatttaatagaagtgcacaatctaaccatttatc 203  Q
    ||||| ||| |||| || ||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  2320142 gaagctattgagatcagatgtgggagaacatgataagctttaatagaaatgcacaatctaaccatttatc 2320211  T

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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 203
Target Start/End: Complemental strand, 18246315 - 18246229
Alignment:
Q  119 agaaaagtttggagag--aagccattaagattaggtgtgggagaacatgataagatttaatagaagtgcacaatctaaccatttatc 203  Q
    ||||||||||||| ||  |||| ||| |||| || ||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  18246315 agaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatgcacaatctaaccatttatc 18246229  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 203
Target Start/End: Original strand, 16990509 - 16990595
Alignment:
Q  119 agaaaagtttggagag--aagccattaagattaggtgtgggagaacatgataagatttaatagaagtgcacaatctaaccatttatc 203  Q
    ||||||||||||| ||  |||| ||| |||| || ||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  16990509 agaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatgcacaatctaaccatttatc 16990595  T

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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 203
Target Start/End: Complemental strand, 37242091 - 37242005
Alignment:
Q  119 agaaaagtttggagag--aagccattaagattaggtgtgggagaacatgataagatttaatagaagtgcacaatctaaccatttatc 203  Q
    ||||||||||||| ||  |||| ||| |||| || ||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  37242091 agaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatgcacaatctaaccatttatc 37242005  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 119 - 203
Target Start/End: Complemental strand, 1258803 - 1258717
Alignment:
Q  119 agaaaagtttggagag--aagccattaagattaggtgtgggagaacatgataagatttaatagaagtgcacaatctaaccatttatc 203  Q
    ||||||||||||| ||  |||| ||| |||| || ||||||||||||||||||| |||||||||| |||| ||||||||||||||||    
T  1258803 agaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatgcataatctaaccatttatc 1258717  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 13810019 - 13809979
Alignment:
Q  163 atgataagatttaatagaagtgcacaatctaaccatttatc 203  Q
    |||||||| ||||||||||||||||||| ||||||||||||    
T  13810019 atgataagctttaatagaagtgcacaatgtaaccatttatc 13809979  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 34873626 - 34873684
Alignment:
Q  134 gaagccattaagattaggtgtgggagaacatgataagatttaatagaagtgcacaatct 192  Q
    ||||| ||| |||| || ||||||||||||||||||| |||||||||| ||||| ||||    
T  34873626 gaagctattgagatcagatgtgggagaacatgataagctttaatagaaatgcactatct 34873684  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 203
Target Start/End: Complemental strand, 31234254 - 31234168
Alignment:
Q  119 agaaaagtttggagag--aagccattaagattaggtgtgggagaacatgataagatttaatagaagtgcacaatctaaccatttatc 203  Q
    ||||||||||||| ||  |||| ||| |||| || ||| ||||||||||||||| |||||||||| || ||||||||| ||||||||    
T  31234254 agaaaagtttggaaagtgaagctattgagatcagatgtaggagaacatgataagctttaatagaaatgtacaatctaatcatttatc 31234168  T

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