View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_174 (Length: 222)
Name: NF3820_low_174
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_174 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 3789096 - 3788907
Alignment:
| Q |
18 |
agaaaatgactattaagaatatagaagaaggtggccagtcatcacataatctccaaaagtttattacttgggcgaattattaatgtttttataatctatt |
117 |
Q |
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| T |
3789096 |
agaaaatgactattactaatatagaagaaggtggccagtcatcacataatcttcaaaagtttattagttgggcgaattattaatgtttttataatctatt |
3788997 |
T |
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| Q |
118 |
atttcttgttgttttgaattagtggtgttaaatattcatgtatgatgaaggaaaaacaattagtggtgtctctttttgccttaagtattatc |
209 |
Q |
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| T |
3788996 |
atttcttgttgttttgaattagtggtgttaaatattcatgtatgatgaaggaaaaacaattagtggtgtctctttt--ccttgagtattatc |
3788907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 3801011 - 3801136
Alignment:
| Q |
18 |
agaaaatgactattaagaatatagaagaaggtggccagtcatcacataatctccaaaagtttattacttgggcgaattattaatgtttttataatctatt |
117 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3801011 |
agaaaatgactattactaatatagaagaaggtggccagtcatcacataatctccaaaagtttattacttgggcgaattattaatgtgtttataatctatt |
3801110 |
T |
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| Q |
118 |
atttcttgttgttttgaattagtggtgtt |
146 |
Q |
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| T |
3801111 |
a---cttgttgttttgaattagtgttgtt |
3801136 |
T |
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