View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_low_175 (Length: 220)
Name: NF3820_low_175
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_low_175 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 25 - 219
Target Start/End: Original strand, 38225337 - 38225531
Alignment:
| Q |
25 |
ggcttatgggttgtggcaatctgataaaaacagatacgtttcgtactaagcaattcccttttaaattaagcagctatacgttacagcaaacttaccacat |
124 |
Q |
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| T |
38225337 |
ggcttatgggttgtggcaatctgataaaaacagatacgtttcgtactaagcaattcccttttaaattaagcagctatacgttacagcaaacttaccacat |
38225436 |
T |
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| Q |
125 |
aggcatatgatacaagaaagagtggactaagccaaaataattacacactatgtatcactagaacacggcattgatgcaaacttcatacttgtctt |
219 |
Q |
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| T |
38225437 |
agccatatgatacaagaaagagtggactaagccaaaataattacacactatgtatcactagaacacggcattgatgcaaacttcatacttgtctt |
38225531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 38219337 - 38219402
Alignment:
| Q |
131 |
atgatacaagaaagagtggactaagccaaaataattacacactatgtatcactagaacacggcatt |
196 |
Q |
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| T |
38219337 |
atgatacaagaaagagtggattaagccaaaataattacacactatgcatcactagaacacggcatt |
38219402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 38212900 - 38212949
Alignment:
| Q |
112 |
aaacttaccacataggcatatgatacaagaaagagtggactaagccaaaa |
161 |
Q |
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| T |
38212900 |
aaacttatcacatagccatatgatacaagaaagagtgaattaaggcaaaa |
38212949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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